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Detailed information on CNT30394524


BLAST search results

BLAST vs Swiss-Prot:
sp|O65719|HSP7C_ARATH, E-value = 5e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535611Triticum turgidumEucalyptus grandis56.258.2390.34207forward
CNT30549087Triticum turgidumIpomoea triloba38.0451.6680.71140forward
CNT30515000Triticum turgidumJuglans regia37.2321.6481.02137forward
CNT3070359Triticum turgidumQuercus suber24.1829.1887.6489forward
CNT30196423Triticum turgidumPisum sativum29.0845.7383.18107forward
CNT30224553Triticum turgidumHordeum vulgare25.8245.6788.4295forward
CNT30510956Triticum turgidumSolanum lycopersicum17.1223.688.8963forward
CNT30613938Triticum turgidumArabis alpina49.1870.4386.74181forward
CNT30625111Triticum turgidumDaucus carota50.2718.2885.95185forward
CNT30722154Triticum turgidumTriticum spelta25.8242.2297.8995forward
CNT30424411Triticum turgidumPapaver somniferum23.3710.7183.7286forward
CNT30570947Triticum turgidumVitis vinifera29.8944.5381.82110forward
CNT30644072Triticum turgidumCannabis sativa51.942.7384.82191forward
CNT30325214Triticum turgidumAsparagus officinalis2530.6788.0492forward
CNT30112072Triticum turgidumFicus carica55.4391.0784.8204forward

Expression of CNT30394524

Peptides detected in this lncRNA

>peptide 1 (77 aa)
GVSTDILLVLPLELLDKVVHHTVVKVLPTKVSVTSRGLHLKNTLLNGKERDIKSATTKVKDKHILLTDTAFLIVTPR*

>peptide 2 (31 aa)
LGFPLISFLCFLLNSWTKWFTIRLSKSSPPR*

>peptide 3 (35 aa)
MRTMEEISSAENCLSSPLYCTTIIGLSAGPGITLYG

Sequence

>CNT30394524
CTGGGGTTTCCACTGATATCCTTCTTGTGCTTCCTCTTGAACTCTTGGACAAAGTGGTTCACCATACGGTTGTCAAAGTCCTCCCCACCAAGGTGAGTGT
CACCAGCCGTGGCCTTCACCTCAAAAATACCCTCCTCAATGGTAAGGAGAGAGACATCAAAAGTGCCACCACCAAGGTCAAAGATAAGCACATTCTTCTC
ACCGACACTGCATTCTTAATAGTTACTCCTAGGTAAGCCTCAGCGATCTCACGCATCTTGATGAGGACCATGGAAGAAATTTCTTCAGCTGAGAACTGCT
TGTCCTCACCCTTGTACTGCACTACAATCATAGGCTTGTCTGCGGGGCCAGGAATAACCTTGTACGGC