Detailed information on CNT30644072


BLAST search results

BLAST vs Swiss-Prot:
sp|O65719|HSP7C_ARATH, E-value = 3e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520958Cannabis sativaSetaria italica20.136.4685.5690forward
CNT30535611Cannabis sativaEucalyptus grandis58.1710.3485.77260forward
CNT30549087Cannabis sativaIpomoea triloba27.2945.0285.25122forward
CNT30224553Cannabis sativaHordeum vulgare18.5739.990.3683forward
CNT30394524Cannabis sativaTriticum turgidum42.7351.984.82191forward
CNT30510956Cannabis sativaSolanum lycopersicum24.1640.4586.11108forward
CNT30613938Cannabis sativaArabis alpina43.6275.8887.18195forward
CNT3041011Cannabis sativaChlamydomonas reinhardtii14.7723.4987.8866forward
CNT30625111Cannabis sativaDaucus carota50.7822.4387.67227forward
CNT30325214Cannabis sativaAsparagus officinalis19.0228.3387.0685forward
CNT30112072Cannabis sativaFicus carica32.6665.1888.36146forward

Expression of CNT30644072

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVRSDTSKVPPPKSKIKTFFSPTLVAFLSRP*

>peptide 2 (46 aa)
ADVLLVLPLELLNEMVDHSVVKIFSTEMGVTSGGFHLKDTLFNGKE*

Sequence

>CNT30644072
CCGCTGATGTCCTTCTTGTTCTTCCTCTTGAACTCCTGAACGAAATGGTTGACCATTCTGTTGTCAAAATCTTCTCCACCGAGATGGGTGTCACCAGCGG
TGGCTTTCACCTCAAAGATACCCTCTTCAATGGTAAGGAGTGACACATCAAAAGTACCACCTCCCAAATCAAAGATCAAAACATTCTTCTCACCAACGCT
GGTGGCCTTCTTGTCAAGACCATAAGCGATGGCGGCGGCAGTGGGCTCGTTGATAATACGCATCACGTTCAAACCAGCAATAACTCCGGCGCATGAGTAA
GTGGTACCCAAATCGATTCCTATAGCAGGTCCTTCACCTTTGCCTGCCATCTCTCTGAGATAAGAAATCTAGAGAGCGTATAAGGAAAAAGGGTAGAAAC
TGAAATTTGAAGAGAAAGCAAAAGAGAGAGGCGGCCTGCAATGTTAG