Detailed information on CNT30672831


BLAST search results

BLAST vs Swiss-Prot:
sp|P22953|HS701_ARATH, E-value = 3e-46

BLAST vs NONCODE:
NONVVIT003131, E-value = 1e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515289Setaria viridisJuglans regia27.9517.3386.7583forward
CNT3061823Setaria viridisArabidopsis lyrata21.558.7885.9464forward
CNT30138690Setaria viridisLolium perenne27.6117.1290.2482forward
CNT30625111Setaria viridisDaucus carota34.3410.0887.25102forward
CNT30360803Setaria viridisLactuca sativa28.2810.8985.7184forward
CNT30154479Setaria viridisPrunus persica27.9519.1290.3683forward
CNT30572753Setaria viridisVitis vinifera27.615.8487.882forward
CNT3056582Setaria viridisAmborella trichopoda27.9512.8785.5483forward

Expression of CNT30672831

Peptides detected in this lncRNA

>peptide 1 (46 aa)
HLGDDGVAQALQLLHLVLELVRLGELVGVVLQRVLGLHLLLVLLVL*

Sequence

>CNT30672831
ACATCTTGGCGATGATGGGGTTGCACAGGCTCTCCAGCTCCTTCATCTTGTCCTCGAACTCGTCCGCCTCGGCGAGCTGGTTGGCGTAGTTCTCCAGAGA
GTTCTTGGACTCCACCTTCTTCTTGTGCTCCTCGTCCTCTGACTTGTACTTCTCAGCGTCCTGCACCATCTTCTCGATCTCCTCCTTGGACAGACGGCCC
TTATCGTTGGTGATGGTGATCTTGTTCTTCTGGCCCGTGGTCTTGTCCTCAGCGGAGACGTTCAGGATGCCGCGCTCGGAATCGGTGAAGGCGACGT