Detailed information on CNT30168984


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520958Pistacia veraSetaria italica25.625.8884.1582forward
CNT30535611Pistacia veraEucalyptus grandis48.446.1785.81155forward
CNT30617543Pistacia veraSesamum indicum35.3112.4389.38113forward
CNT30490395Pistacia veraOlea europaea35.3114.1688.5113forward
CNT30440568Pistacia veraAegilops tauschii38.1235.9981.15122forward
CNT3061823Pistacia veraArabidopsis lyrata45.3119.8981.38145forward
CNT30647172Pistacia veraRosa chinensis29.692588.4295forward
CNT30625111Pistacia veraDaucus carota257.918580forward
CNT30683744Pistacia veraTriticum urartu25.9418.6185.5483forward
CNT30150813Pistacia veraBrachypodium distachyon45.6225.6682.19146forward
CNT30496988Pistacia veraDigitaria exilis20.316.887.6965forward
CNT30112153Pistacia veraFicus carica65.3123.2288.52209forward

Expression of CNT30168984

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MDSALVHLSVSQTLLNGLHTLSKEIHVKLLKSGTSNG*

>peptide 2 (78 aa)
TICNSLIRINILASSFPLKKSCKSCCTFGILVEPPTSTTSWTVLLSILASLKHFSTGSIHFLKRSMLSSSNLARVMVE*

Sequence

>CNT30168984
ACCATATGCAACAGCCTCATCCGGATTAATATTCTTGCAAGCTCCTTTCCATTGAAGAAGTCTTGCAAAAGCTGTTGCACTTTTGGAATCCTAGTTGAAC
CACCAACAAGCACAACATCATGGACAGTGCTCTTGTCCATCTTAGCGTCTCTCAAACACTTCTCAACGGGCTCCATACACTTTCTAAAGAGATCCATGTT
AAGCTCCTCAAATCTGGCACGAGTAATGGTTGAATAGAAATCAATACCCTCATACAAAGAATCAATCTCGATTGTTGTCTGAGCAGTAGATGAAAGAGTC
CTCTTGGCCCTCTCGCACGC