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Detailed information on CNT30515289


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LHA8|HS704_ARATH, E-value = 5e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696916Juglans regiaOryza sativa43.4259.9482.21208forward
CNT30672831Juglans regiaSetaria viridis17.3327.9586.7583forward
CNT30522780Juglans regiaSetaria italica20.2511.4887.6397forward
CNT30535611Juglans regiaEucalyptus grandis48.029.1582.61230forward
CNT30490395Juglans regiaOlea europaea51.3630.8384.15246forward
CNT30588413Juglans regiaMusa acuminata15.4532.7485.1474forward
CNT30510806Juglans regiaSolanum lycopersicum21.0934.9582.18101forward
CNT3061823Juglans regiaArabidopsis lyrata29.2319.280140forward
CNT30614007Juglans regiaArabis alpina29.2323.1482.14140forward
CNT30138690Juglans regiaLolium perenne27.9727.9782.84134forward
CNT305922Juglans regiaZea mays16.9122.0787.6581forward
CNT30625111Juglans regiaDaucus carota47.3922.4381.06227forward
CNT30368207Juglans regiaSorghum bicolor17.7531.8488.2485forward
CNT30621132Juglans regiaCajanus cajan20.4616.7587.7698forward
CNT30360803Juglans regiaLactuca sativa41.9626.0780.1201forward
CNT30369286Juglans regiaOryza glumipatula35.0728.1479.76168forward
CNT30154479Juglans regiaPrunus persica44.2648.8581.6212forward
CNT30572753Juglans regiaVitis vinifera35.712.1783.63171forward
CNT3056582Juglans regiaAmborella trichopoda30.2722.4884.14145forward
CNT30578076Juglans regiaOryza barthii45.9327.3682.27220forward

Expression of CNT30515289

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MMGLQILSSSFILSSNSSASASWLPSSHSMACSIASSTFFLSAGASLELILSSLIVFFMLYA*

>peptide 2 (40 aa)
VSGEKSRDKQHFPIVKYGYTKSTEIKIESLTTILKYLKTS*

Sequence

>CNT30515289
GTGTCGGGAGAAAAGTCTCGGGACAAACAGCATTTCCCAATTGTAAAATACGGATATACAAAGTCCACTGAAATTAAAATTGAGAGCTTAACTACGATAT
TAAAGTACTTGAAAACCTCCTAAACAGAACCCCATACCGGCATTATAAAAATAAAAAAGCAGATTAAGGCTCTTAGTCAACCTCCTCAATCTTAGGACCA
GCACCACCACTGCTTCCAGCAGGAGGGCCCAGCACCCTGATACATCTTGGCTATGATGGGGTTACAGATACTTTCGAGCTCCTTCATCTTGTCCTCGAAC
TCATCTGCCTCTGCAAGCTGGTTGCCATCTAGCCATTCGATGGCTTGTTCAATTGCATCCTCAACCTTCTTCTTGTCAGCTGGGGCTAGCTTGGAACTGA
TCTTGTCATCCTTAATAGTGTTCTTCATGTTGTATGCATAGTTCTCCAAAGCATTCTTCGCCTCGATTTTCTTCTTGAG