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Detailed information on CNT30150813


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549087Brachypodium distachyonIpomoea triloba14.5930.6384.3483forward
CNT30168984Brachypodium distachyonPistacia vera25.6645.6282.19146forward
CNT30224553Brachypodium distachyonHordeum vulgare19.8654.3392.92113forward
CNT3061823Brachypodium distachyonArabidopsis lyrata26.0120.383.78148forward
CNT30625111Brachypodium distachyonDaucus carota29.5316.685.12168forward
CNT30367262Brachypodium distachyonSorghum bicolor23.221.0984.85132forward
CNT30595552Brachypodium distachyonOryza meridionalis8.6121.6891.8449forward
CNT30325214Brachypodium distachyonAsparagus officinalis19.8637.6788.5113forward

Expression of CNT30150813

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MPSNSESISMVVWAVEERVLFALSQDVLSLRRALGLPLMSFLFFLLNSWTKWL

>peptide 2 (45 aa)
KPNILINPRRRDVALVSNVPILVLPTITWSKIITRPQLKVSQTTI*

>peptide 3 (98 aa)
MPEPSMSAPAPWYILAMIGLHRLHALPEQIHVHLLKPGTGDGGVEVNALEQRVNLNGGLGSGGESPLCPLTGCPQPPESPWVATDVLLVLSLKLLDEVV

Sequence

>CNT30150813
CTAAACCGAATATATTAATCAATCCACGTCGCAGAGACGTGGCACTCGTTTCCAATGTTCCCATACTAGTACTACCGACCATCACTTGGTCCAAAATAAT
AACACGACCACAACTCAAAGTTTCACAGACCACGATATAATAGTAACCATACGACGATAACTAGCAGCAACGCATCAGCGCGCAGCTGCCACAAAACGAC
GGCGACTCGCTTAGTCGACCTCCTCGATCTTGGGGCCAGGGCCGCCGGAAGCAGCAGGGGTGTCTTCGTCCATGCCCGAGCCCTCCATGTCAGCACCGGC
GCCCTGGTACATCTTGGCGATGATCGGGTTGCACAGGCTCCATGCACTTCCTGAACAGATCCATGTTCATCTCCTCAAACCTGGCACGGGTGATGGTGGA
GTAGAAGTCAATGCCCTCGAACAGCGAGTCAATCTCAATGGTGGTCTGGGCAGTGGAGGAGAGAGTCCTCTTTGCCCTCTCACAGGATGTCCTCAGCCTC
CGGAGAGCCCTTGGGTTGCCACTGATGTCCTTCTTGTTCTTTCTCTTAAACTCCTGGACGAAGTGGTTG