Detailed information on CNT30704384


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 4e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678577Prunus aviumSetaria viridis12.5720.2985.7170forward
CNT30522084Prunus aviumSetaria italica14.7226.8987.882forward
CNT30317272Prunus aviumCorylus avellana14.3620.5791.2580forward
CNT30403515Prunus aviumBeta vulgaris17.5938.1383.6798forward
CNT30710214Prunus aviumGlycine max15.9829.2885.3989forward
CNT30177379Prunus aviumSecale cereale7.921.0590.9144forward
CNT30296001Prunus aviumTriticum aestivum14.3620.058580forward
CNT30562915Prunus aviumActinidia chinensis17.0641.6791.5895forward
CNT30237104Prunus aviumBrassica oleracea19.3933.3382.41108forward
CNT30553219Prunus aviumOryza glaberrima13.8237.3888.3177forward
CNT30440804Prunus aviumAegilops tauschii10.5928.7889.8359reverse complement
CNT3075316Prunus aviumBrassica juncea15.9829.9784.2789forward
CNT30611949Prunus aviumArabis alpina17.0627.4683.1695forward
CNT30136247Prunus aviumLolium perenne17.0631.0585.2695forward
CNT3041150Prunus aviumChlamydomonas reinhardtii19.9324.3482.88111forward
CNT30609153Prunus aviumGossypium raimondii18.6725.6884.62104forward
CNT30716312Prunus aviumMalus domestica golden18.4921.6485.44103forward
CNT30720027Prunus aviumTriticum spelta13.6437.2585.5376forward
CNT30620135Prunus aviumCajanus cajan16.8830.0384.0494forward
CNT30596030Prunus aviumOryza meridionalis10.0523.3389.2956forward
CNT3040646Prunus aviumMarchantia polymorpha16.5229.6884.7892forward

Expression of CNT30704384

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MLRRGGRRRRGGVYQDAFVLGWVVRDSGLRLVVFKGRKSNWG*

>peptide 2 (91 aa)
RKPLQKQRPETRPGTATNGIEDQEPLKPGTVISELPDAVQAEIDDLLADGVVAAADGLVAGHLAIGANAVLEAVELPAGVAHLDTGLTDVD*

>peptide 3 (37 aa)
MRSRQRSTISLPMASSPRPTVLSLGIWPSGPMPCSRQ*

Sequence

>CNT30704384
CCGAAAGCCGCTCCAGAAGCAACGACCCGAGACCCGACCCGGTACCGCCACCAACGGCATTGAAGACCAAGAACCCCTGAAGCCCGGTACAGTTATCAGC
GAGCTTCCTGATGCGGTCCAGGCAGAGATCGACGATCTCCTTGCCGATGGCGTCGTCGCCGCGGCCGACGGTCTTGTCGCTGGGCATCTGGCCATCGGGG
CCAATGCCGTGCTCGAGGCAGTAGAGCTCCCAGCAGGCGTTGCCCACTTGGATACCGGCTTGACCGATGTGGATTGAAATGCACTCTCTCATTTTCGCTG
AGGTTAGGGTTAGGGTTTTGGAAATGAAAGGATGTTGAGAAGAGGAGGAAGAAGGAGGAGAGGCGGCGTTTACCAAGACGCCTTCGTTTTGGGTTGGGTT
GTACGAGATTCAGGGCTGAGGCTTGTGGTTTTTAAAGGGAGAAAATCTAATTGGGGTTAGTTGACCGGAGGCTGAGGTGGCTGAGGTTAAAATTAGGGTT
TGCCAGCTCTGAGGAGAGAGAGGAGCTGAATCATTGGACACCCGGCTGGCCCTTAAC