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Detailed information on CNT30229012


BLAST search results

BLAST vs Swiss-Prot:
sp|P46259|TBA1_PEA, E-value = 9e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677932Ananas comosusSetaria viridis27.6230.7889.08229forward
CNT30521842Ananas comosusSetaria italica27.6224.8189.08229forward
CNT30640127Ananas comosusNymphaea colorata26.927.9488.34223forward
CNT30532757Ananas comosusEucalyptus grandis26.1849.3283.87217forward
CNT30547493Ananas comosusIpomoea triloba28.7121.2985.71238forward
CNT30517711Ananas comosusJuglans regia26.341.1387.61218forward
CNT30702815Ananas comosusQuercus lobata19.944.8486.67165forward
CNT30371538Ananas comosusArabidopsis thaliana28.2349.2684.62234forward
CNT30618174Ananas comosusSesamum indicum15.229.1787.3126forward
CNT30727923Ananas comosusCorchorus capsularis29.7920.8687.04247forward
CNT3071007Ananas comosusQuercus suber17.2527.9884.62143forward
CNT30379228Ananas comosusManihot esculenta28.5927.1887.34237forward
CNT30504800Ananas comosusNicotiana attenuata27.2651.1384.51226forward
CNT30709049Ananas comosusGlycine max29.4335.2186.07244forward
CNT30184570Ananas comosusSecale cereale24.9732.6588.89207forward
CNT30295550Ananas comosusTriticum aestivum25.8130.7988.79214forward
CNT30224654Ananas comosusHordeum vulgare29.4315.9885.25244forward
CNT30391523Ananas comosusTriticum turgidum25.8129.0488.79214forward
CNT3086234Ananas comosusVigna radiata24.4938.385.71203forward
CNT30555352Ananas comosusOryza glaberrima29.9227.4385.08248forward
CNT30144939Ananas comosusMedicago truncatula44.3975.5683.42368forward
CNT30439881Ananas comosusAegilops tauschii26.328.4287.61218forward
CNT30249355Ananas comosusAvena sativa28.9531.9188.33240forward
CNT30655883Ananas comosusTriticum dicoccoides28.5933.1986.92237forward
CNT3059767Ananas comosusArabidopsis lyrata27.9932.7285.34232forward
CNT3075301Ananas comosusBrassica juncea13.7521.4786.84114forward
CNT30265526Ananas comosusBrassica rapa28.5923.8787.34237forward
CNT30446371Ananas comosusSaccharum spontaneum30.7629.7287.06255forward
CNT30136973Ananas comosusLolium perenne10.9821.6787.9191forward
CNT30953Ananas comosusZea mays26.923.5787.44223forward
CNT3041114Ananas comosusChlamydomonas reinhardtii17.2520.3486.01143forward
CNT30217674Ananas comosusKalanchoe fedtschenkoi23.5254.6284.1195forward
CNT30204030Ananas comosusHelianthus annuus27.2654.4687.61226forward
CNT30624589Ananas comosusDaucus carota12.6721.1790.48105forward
CNT30689745Ananas comosusTriticum urartu28.5931.187.34237forward
CNT30721351Ananas comosusTriticum spelta26.332.9388.07218forward
CNT30361562Ananas comosusSorghum bicolor29.5524.7788.98245forward
CNT30597037Ananas comosusOryza meridionalis27.7443.8984.78230forward
CNT30359250Ananas comosusLactuca sativa17.4921.3285.52145forward
CNT30371350Ananas comosusOryza glumipatula29.9230.2485.08248forward
CNT30481833Ananas comosusChara braunii16.7747.1285.61139forward
CNT30430260Ananas comosusPapaver somniferum26.6637.9785.97221forward
CNT30570163Ananas comosusVitis vinifera26.326.3387.61218forward
CNT3052700Ananas comosusAmborella trichopoda18.749.0586.45155forward
CNT30106557Ananas comosusOryza longistaminata23.2890.1984.46193forward
CNT3024728Ananas comosusPopulus trichocarpa55.6156.7784.6461forward
CNT30148523Ananas comosusBrachypodium distachyon20.3926.285.8169forward
CNT30100634Ananas comosusOryza rufipogon26.362.6488.53218forward
CNT30582828Ananas comosusEchinochloa crusgalli32.4531.3586.62269forward
CNT30117950Ananas comosusOryza nivara26.1826.1885.71217forward
CNT30558847Ananas comosusPanicum hallii21.9524.6687.91182forward
CNT30333509Ananas comosusCynara cardunculus28.5943.0983.54237forward
CNT30726259Ananas comosusLupinus angustifolius27.0227.0287.5224forward

Expression of CNT30229012

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MYLPWRGSHFAIMDEGSKALLVISATESCSW*

>peptide 2 (42 aa)
MVGLLSRDDRSIGGKHEVNSRIRDQVGLELSDINIQGTVKPQ*

>peptide 3 (63 aa)
MRSNLWSMRENTSATLVELDIMHTALCTFARSPPGTTVGGWPCTCRGGGRTSPSWTKAQRHCW*

Sequence

>CNT30229012
GTCGAAGCCTGAGCTGTCAAAATATAGCATAGAGGAACAAAGATGACAAACAGTAAACTCCATAACAAGAAACAAACCATCCATAGAGAGCACACTGGCA
AGGGCACAGCAACATTTTAGAGATAAGGTTCACGGAGGACAAACTTGTAAGGGGCATGGCATCTAAAGATGCGGGAGAGGTTCATCAAAGATAACACGAC
AGAACATCAACAAGCAACCAACAACATAAGCAGATAATGCAGACACTGCTGAAAAGTACACAACAACAGACCGAGAGATGGAAAGATAAAACATCAGCTA
CTTAGTAGTCGTCACCTTCATCACCCTCTTCTCCCTCATTAGACTCTGCGCCAACCTCCTCATAGTCCTTCTCGAGCGCAGCAAGGTCCTCACGGGCCTC
GGAGAACTCCCCTTCCTCCATGCCCTCACCCACATACCAGTGAACAAAGGCACGCTTAGCATACATGAGATCAAACTTGTGGTCGATGCGGGAGAACACC
TCAGCAACGCTAGTGGAGTTGGATATCATGCACACAGCCCTCTGCACCTTTGCGAGATCACCACCTGGCACAACAGTTGGTGGCTGGCCATGTACTTGCC
GTGGCGGGGGTCGCACTTCGCCATCATGGACGAAGGCTCAAAGGCACTGTTGGTAATTTCAGCAACAGAGAGTTGCTCATGGTAGGCCTTCTCAGCAGAG
ATGACAGGAGCATAGGAGGAAAGCATGAAGTGAATTCTAGGATAAGGGACCAGGTTGGTCTGGAACTCAGTGACATCAACATTCAGGGCACCGTCAAACC
TCAATGAAGCCGTCAAAGATGAAATCACC