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Detailed information on CNT30504799


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 7e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Nicotiana attenuataOryza sativa51.6628.9485.15202forward
CNT30371538Nicotiana attenuataArabidopsis thaliana60.8750.1187.39238forward
CNT30618173Nicotiana attenuataSesamum indicum99.4949.0584.58389forward
CNT30712730Nicotiana attenuataGlycine max62.9248.0586.99246forward
CNT30283587Nicotiana attenuataTriticum aestivum92.8450.787.05363forward
CNT30382785Nicotiana attenuataTriticum turgidum92.8447.786.78363forward
CNT30555352Nicotiana attenuataOryza glaberrima81.5935.2982.45319forward
CNT30435101Nicotiana attenuataAegilops tauschii77.4998.0684.49303forward
CNT30249355Nicotiana attenuataAvena sativa62.9232.7186.18246forward
CNT30655738Nicotiana attenuataTriticum dicoccoides74.6843.3987.67292forward
CNT30219368Nicotiana attenuataKalanchoe fedtschenkoi53.9636.1385.31211forward
CNT30208739Nicotiana attenuataHelianthus annuus53.9653.4286.26211forward
CNT30103952Nicotiana attenuataOryza rufipogon81.5934.3482.76319forward

Expression of CNT30504799

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDPGVRHKIGLEFIHINIQSTIKPQRCCE*

>peptide 2 (91 aa)
PLHLSKIATRNNSWWLIVNTTLESSRAPVNELDSALGLDGGHSSINILWHHITTEHEAASHVLPMTRVTLNHHGRWLKGTVGLLSRNDRSI*

>peptide 3 (56 aa)
MEDGSKALLAFSAEMTGAYEESIKWILGYGTRLVWNSFTSTFKAPSNLKDAVSEEIT

Sequence

>CNT30504799
CCCTCTGCACCTTAGCAAGATCGCCACCAGGAACAACAGTTGGTGGCTGATAGTTAATACCACACTTGAATCCAGTAGGGCACCAGTCAACGAATTGGAT
AGTGCGCTTGGTCTTGATGGTGGCCACAGCAGCATTAACATCCTTTGGCACCACATCACCACGGAACATGAGGCAGCAAGCCATGTACTTCCCATGACGA
GGGTCACACTTAACCATCATGGAAGATGGCTCAAAGGCACTGTTGGCCTTCTCAGCAGAAATGACAGGAGCATATGAGGAAAGCATAAAATGGATCCTGG
GGTACGGCACAAGATTGGTCTGGAATTCATTCACATCAACATTCAAAGCACCATCAAACCTCAAAGATGCTGTGAGTGAAGAGATAACCTG