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Detailed information on CNT30597037


BLAST search results

BLAST vs Swiss-Prot:
sp|P11139|TBA1_ARATH, E-value = 2e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697150Oryza meridionalisOryza sativa45.4265.2192.02238forward
CNT30677932Oryza meridionalisSetaria viridis44.2731.1889.66232forward
CNT30521842Oryza meridionalisSetaria italica44.2725.1489.66232forward
CNT30618174Oryza meridionalisSesamum indicum18.5122.4582.4797forward
CNT3021397Oryza meridionalisCitrullus lanatus20.4216.1684.11107forward
CNT30224654Oryza meridionalisHordeum vulgare35.1112.0594.02184forward
CNT30555352Oryza meridionalisOryza glaberrima80.7346.7997.4423forward
CNT30655738Oryza meridionalisTriticum dicoccoides44.4734.6287.55233forward
CNT30444717Oryza meridionalisSaccharum spontaneum34.1633.7195.53179forward
CNT3041114Oryza meridionalisChlamydomonas reinhardtii26.1519.4991.24137forward
CNT30229012Oryza meridionalisAnanas comosus43.8927.7484.78230forward
CNT30340361Oryza meridionalisEragrostis tef29.229.2587.58153forward
CNT30371350Oryza meridionalisOryza glumipatula60.1138.4195.56315forward
CNT30430260Oryza meridionalisPapaver somniferum34.1630.7679.89179forward
CNT3024728Oryza meridionalisPopulus trichocarpa34.1622.0483.24179forward
CNT30103952Oryza meridionalisOryza rufipogon81.1145.7595.53425forward
CNT30117970Oryza meridionalisOryza nivara53.6342.6493.24281forward

Expression of CNT30597037

Peptides detected in this lncRNA

>peptide 1 (36 aa)
KEGSQNNTGHSSESYKQTRHNRKANVLSKADTQTDR*

>peptide 2 (71 aa)
MPSPTYQWTKARLEYMRSNLMSMRENTSTTLVELEIMQHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

>peptide 3 (45 aa)
KKVHKTTQVTAAKATSKPGITEKQMFFQKQTHKLIDRSPHGQIIG*

Sequence

>CNT30597037
AAAGAAGGTTCACAAAACAACACAGGTCACAGCAGCGAAAGCTACAAGCAAACCCGGCATAACCGAAAAGCAAATGTTCTTTCAAAAGCAGACACACAAA
CTGATAGATAGAAGCCCACACGGGCAGATCATAGGATAGCAGCAGTAATCAGGCACATTGCCAAGGCAGCAGGAACCCTGAACCACCCTCTAGTACTCGT
CACCCTCATCACCCTCGTCACCGTCATCGAACTCGGAGCCGACCTCCTCGTAGTCCTTCTCCAGCGCGGCGAGGTCCTCGCGGGCCTCGGAGAACTCCCC
CTCCTCCATGCCCTCGCCGACGTACCAGTGGACGAAGGCGCGCTTGGAGTACATGAGGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACGACGCTG
GTGGAGTTGGAGATCATGCAGCACGCCATGTACTTGCCGTGGCGCGGGTCACACTTGGCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCG
CCACGGAGAGCTGCTCGTGGTAGG