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Detailed information on CNT3055180


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 3e-160

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641326Amborella trichopodaNymphaea colorata59.9255.4282.55619forward
CNT30534338Amborella trichopodaEucalyptus grandis58.4753.5986.59604forward
CNT30316100Amborella trichopodaCorylus avellana57.8963.4182.11598forward
CNT30500912Amborella trichopodaCoffea canephora57.8958.482.78598forward
CNT30616124Amborella trichopodaSesamum indicum58.4752.9482.78604forward
CNT30524978Amborella trichopodaPhaseolus vulgaris44.6359.1883.08461forward
CNT30629263Amborella trichopodaVigna unguiculata57.1257.3483.39590forward
CNT30504491Amborella trichopodaNicotiana attenuata50.3454.8582.5520forward
CNT30709901Amborella trichopodaGlycine max47.2454.183.81488forward
CNT30633730Amborella trichopodaCapsicum annuum51.2157.8883.18529forward
CNT3091168Amborella trichopodaSolanum tuberosum50.3462.8884.04520forward
CNT30562281Amborella trichopodaActinidia chinensis52.3770.7281.33541forward
CNT3088186Amborella trichopodaVigna radiata58.1855.1483.03601forward
CNT30508817Amborella trichopodaSolanum lycopersicum51.2153.3383.74529forward
CNT30598305Amborella trichopodaFraxinus excelsior36.6955.4983.64379forward
CNT30609649Amborella trichopodaGossypium raimondii50.6369.0982.22523forward
CNT30714756Amborella trichopodaMalus domestica golden45.6946.583.47472forward
CNT30623002Amborella trichopodaDaucus carota57.8963.0881.44598forward
CNT30359492Amborella trichopodaLactuca sativa55.3766.980.94572forward
CNT30429024Amborella trichopodaPapaver somniferum57.748.4280.54596forward
CNT30725332Amborella trichopodaLupinus angustifolius58.2858.4580.56602forward

Expression of CNT3055180

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWMTSSSLFLAKVSGSAERPAVSHP*

>peptide 2 (29 aa)
MARRPRITFRAQSWWSARFSNGPFPVTMA*

>peptide 3 (32 aa)
MASRPFLISLTFSSAKASGSSARPKGSKLPPG*

>peptide 4 (41 aa)
MGLPQMFFLRDYITNLNLCCIVFCLLPSSDGGAMNMMKNLI*

Sequence

>CNT3055180
AATGCAAACATGGTAGATGGGGTTGCCGCAAATGTTTTTCCTACGAGATTACATTACTAACTTAAATTTGTGCTGTATCGTTTTTTGTTTACTCCCAAGC
AGTGATGGAGGAGCAATGAATATGATGAAGAATTTAATATAGAATTAAAAACTCCACACTCTACACATAAATCAGGTTACATTCGAACATGCATTCACTC
GTGGTTCACTTTCCGGGCACAAAGTTGGTGGCATAGGCCCAAGCGTTGTTGTTCACTGGGTCAGCAAGGTGGTCAGCCAGGTTCTCCAATGGACCCTTTC
CAGTGACAATGGCCTGAACAAAGAACCCGAACATCGAGAACATGGCGAGACGGCCAAGAATCACTTTCCGGGCACAAAGTTGGTGGTCAGCCAGGTTCTC
CAATGGACCCTTTCCAGTGACAATGGCCTGAACAAAGAACCCGAACATCGAGAACATGGCAAGCCGGCCGTTCTTGATCTCCTTGACCTTCAGCTCGGCA
AAGGCCTCAGGGTCCTCAGCCAGGCCCAAGGGATCGAAGCTGCCACCGGGGTAGAGTGGGTCAGTCACCTCACCCAGGGGACCACCGGCCACACGGTAGC
CCTCGACCGCGCCCATGAGGACCACTTGACAGGCCCAGATAGCCAAGATGCTCTGAGCGTGCACCAGGCTCGGGTTCCCCAAGTAGTCGAGTCCACCCTC
ACTGAAGATTTGAGCACCGGCCTTGAACCACACAGCCTCACCAAACTTGACGCCATTGCGAGAGAGTAGCTCTGGGAAAACGCATCCCAAAGCACCGAGC
ATGGCCCACCTGCAGTGGATGACCTCGAGCTCTCTGTTCTTGGCGAAGGTCTCGGGGTCGGCCGAGAGGCCCGCAGTATCCCACCCGTAGTCACCGGGGA
ACTCCCCAGTAAGGTATGACGGGGGCTCCCCGGAGAACGGGCCGAGGTACTTGACTCTGTCGCGGCCGTACCATGGGCTTCCAGACACCGGGGCCCTGCT
AGTACTCTTCCTCATGCTCACTCTTCCGTCGCC