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Detailed information on CNT30500912


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 0.0

BLAST vs NONCODE:
NONMTRT001605, E-value = 5e-79

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534338Coffea canephoraEucalyptus grandis64.5558.6585.93661forward
CNT30598305Coffea canephoraFraxinus excelsior41.762.5284.54427forward
CNT3055180Coffea canephoraAmborella trichopoda58.457.8982.78598forward
CNT30119285Coffea canephoraCitrus clementina64.5573.9483.96661forward

Expression of CNT30500912

Peptides detected in this lncRNA

>peptide 1 (29 aa)
LALAWTNFHQYNMLIFSREPSSMLTNRSL*

>peptide 2 (29 aa)
MAHLQWITSSSRFLAKVSGSADSPAVSQP*

>peptide 3 (46 aa)
MPLDRQQGLMGQNCHLGRLGQSPHRVVHRQYGNPQQLPSRQLGKPR*

>peptide 4 (43 aa)
MAWTKKPNIENMANLPFLISFTFSSANASGSSARPNGSKLPPG*

Sequence

>CNT30500912
GTTTGGCATTAGCTTGGACCAATTTCCACCAATATAACATGCTAATATTCAGCCGCGAGCCGAGCTCGATGCTCACAAACAGATCACTTTAGGGGCTCAC
TATACACACTTTTGGATTCACAAATTACAATCACCGCTAAAACTCATTTTCCAGGGACAAAGTTTGTTGCATAAGCCCAAGCGTTGTTGTTAACTGGATC
CGCAAGGTGGTCAGCAAGATTCTCCAATGGACCCTTTCCAGTGACTATGGCCTGGACAAAGAAGCCGAACATTGAGAACATGGCCAACCTACCATTCTTG
ATCTCCTTCACCTTTAGCTCAGCAAATGCCTCTGGATCGTCAGCAAGGCCTAATGGGTCAAAACTGCCACCTGGGTAGATTGGGTCAGTCACCTCACCGA
GTGGTCCACCGGCAATACGGTAACCCTCAACAGCTCCCATCAAGACAACTTGGCAAGCCCAGATAGCCAAGATGCTTTGGGCGTGGATCAAGTTTGGGTT
GCCCAGGTAGTTGAGTCCACCCTCCTGGAAGATTTGGGATCCAGCCTTGAACCACACAGCCTCACCGAACTGGACTCCATTTCGAGACAAGAGCTCGGGG
AAGACGCATCCAAGGGCTCCAAGCATGGCCCATCTGCAGTGGATCACCTCGAGCTCGCGGTTCTTGGCAAAGGTCTCGGGATCAGCTGACAGCCCAGCAG
TGTCCCAACCGTAGTCTCCGGGGAATTCGCCGGTGAGGTAGCTTGGGGGCTCACCGGAGAATGGGCCCAAGTACTTAACACGGTCTGGACCGTACCATGG
GCTGCCGGATGGGGAAGGCCTGGAAGTTCTCTTCATTGAGATCCTTCCATTTCCCATCAGCTCAGGGGCGGAGGGGTTGAGTTTCACCGCCTTTCCGGCG
AAGGACGGGGAGGAGAGAGCCATAGTTGAGGCAGCCATTGTATGATTGAGGTTAGCAACTGAATGGAACTATTGAAGGCAGCAGGAATTACACAATGCTG
CTTGTGGCTTGAGTTTGATGGCCC