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Detailed information on CNT30508817


BLAST search results

BLAST vs Swiss-Prot:
sp|P07370|CB2B_SOLLC, E-value = 0.0

BLAST vs NONCODE:
NONSTUT001352, E-value = 6e-168

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534338Solanum lycopersicumEucalyptus grandis65.8357.9485.76653forward
CNT30616124Solanum lycopersicumSesamum indicum66.0357.4189.01655forward
CNT30269327Solanum lycopersicumChenopodium quinoa51.3158.1783.69509forward
CNT3046618Solanum lycopersicumPrunus dulcis66.9479.4381.63664forward
CNT3088186Solanum lycopersicumVigna radiata64.7258.981.93642forward
CNT30202642Solanum lycopersicumHelianthus annuus33.5759.7887.09333forward
CNT30356894Solanum lycopersicumLactuca sativa51.8156.2486.96514forward
CNT30153357Solanum lycopersicumPrunus persica65.5236.8182.62650forward
CNT3055180Solanum lycopersicumAmborella trichopoda53.3351.2183.74529forward

Expression of CNT30508817

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MPRGLQQGLMGRSCHRGRVGRQPHQEVHQQYGNLQRLPSRQLGKPRWLRCSVHGPSLGCPSSQVLPR*

>peptide 2 (47 aa)
MVILPFPEISEAEGESFTACPAKEGEERAIVAAAMVFKERKMRELLV*

>peptide 3 (36 aa)
MDQAWVAQVVKSSLAEDLGSGLEPHSLTELDTVTGQ*

Sequence

>CNT30508817
CTTGCAGTATTTCATTCATGCAATTGGAAAATGGAATTATATACTACACCATAGTTGGAATATAAGAAAAATCCATTATATTGTCTAGTAAACTCACAAT
TACAACTTTACAAGGCCATCAATTTATGATATTCATTTTCCAGGAACAAAGTTTGTGGCAAAGGCCCAGGCATTGTTATTAACTGGATCCGCAAGGTGGT
CAGCGAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTAC
CTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCA
GCAATACGGTAACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCTAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGT
CAAGTCCTCCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCGTTACGGGCCAATAGCTCAGGGAAGACACATCC
AAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAGAGTCCAGCGGTATCCCAGCCG
TAGTCACCAGGGAATTCACCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGACTGCTAGATG
GGGCAGACTTGGCAACAGCCTTTCTCATGGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACTGCCTGTCCGGCAAAAGAAGG
AGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTTTTTAAAGAGAGGAAAATGAGGGAGTTGCTAGTTTGATATGTAAAAGTTAGTTGTGATG