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Detailed information on CNT30534338


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 2e-179

BLAST vs NONCODE:
NONBNAT007398, E-value = 3e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315829Eucalyptus grandisCorylus avellana59.5470.5684.8671forward
CNT30500912Eucalyptus grandisCoffea canephora58.6564.5585.93661forward
CNT30709739Eucalyptus grandisGlycine max48.8957.9485.48551forward
CNT30633518Eucalyptus grandisCapsicum annuum58.2171.7785.37656forward
CNT3091201Eucalyptus grandisSolanum tuberosum54.7562.1385.41617forward
CNT30225573Eucalyptus grandisHordeum vulgare55.0138.883.55620forward
CNT30562269Eucalyptus grandisActinidia chinensis51.7361.385.59583forward
CNT30508817Eucalyptus grandisSolanum lycopersicum57.9465.8385.76653forward
CNT30443381Eucalyptus grandisAegilops tauschii47.3855.1785.77534forward
CNT30240130Eucalyptus grandisAvena sativa58.8365.5185.52663forward
CNT30668255Eucalyptus grandisTriticum dicoccoides52.6260.3985.67593forward
CNT30455809Eucalyptus grandisSaccharum spontaneum50.8452.6285.51573forward
CNT30137839Eucalyptus grandisLolium perenne50.4974.2884.89569forward
CNT30609649Eucalyptus grandisGossypium raimondii50.7575.5685.66572forward
CNT30714756Eucalyptus grandisMalus domestica golden47.4752.7184.67535forward
CNT30686710Eucalyptus grandisTriticum urartu55.1969.4283.92622forward
CNT3055180Eucalyptus grandisAmborella trichopoda53.5958.4786.59604forward
CNT30575045Eucalyptus grandisOryza barthii52.863.0386.22595forward

Expression of CNT30534338

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWMTSSSRFLAKVSGSAESPAVSQP*

>peptide 2 (43 aa)
MACTKNPNMENMASLPFLISFTLSSAKASGSSARPKGSKLPPG*

>peptide 3 (39 aa)
MEILPLPRSSGVEGESFTACPARDGEERAMVEAAIVEWI*

>peptide 4 (34 aa)
EIGQDQDRLDHRKLWRTRFADKSMKVKWQIMKEN*

>peptide 5 (71 aa)
MGLGTWRGLDHTMGSQRRLACGRPSSWRFSHCREAREWRGRASPPVQPGMERREPWWKPPLLSGFESLTSV*

Sequence

>CNT30534338
GAAATTGGGCAAGATCAAGATCGCTTGGACCATAGAAAGCTTTGGAGGACAAGGTTTGCAGATAAATCTATGAAGGTTAAGTGGCAAATAATGAAGGAAA
ACTAGGGAACAAACGTGGGAGTCGAGTCGAAAAAGGAAGGAAGATGATTGAAGATGTCACTCAAGAGTCAAGCCAGCGGCAATACATGTAATTTACACTT
CTGAAAGTATCGTTTCCAACCGAACTGTATATCACCCCTCACGCTCACTTTCCAGGGACGAAGTTGGTGGCATAGGCCCAAGCATTGTTGTTAACTGGAT
CAGCAAGGTGGTCAGCCAAGTTCTCCAATGGACCCTTTCCTGTCACAATGGCCTGCACGAAGAACCCAAACATGGAGAACATGGCAAGCCTGCCGTTCTT
GATCTCCTTCACCTTGAGCTCGGCAAAGGCCTCAGGGTCATCGGCCAGGCCCAAGGGGTCGAAGCTCCCCCCGGGGTAGAGCGGGTCGGTGACCTCACCG
AGCGGGCCACCAGCAATACGGTAACCCTCGACGGCTCCCATCAGGATGACTTGGCAGGCCCAGATGGCCAAGATGCTTTGGGCGTGGATCAGGTTGGGGT
TGCCCAGGTAGTCGAGTCCCCCCTCGCTGAAGATCTGGGCGCCGGCCTTGAACCACACAGCCTCACCGAACTTGACGCCGTTGCGGGCCAGGAGCTCAGG
GAAGACGCACCCTAGGGCGCCGAGCATGGCCCACCTGCAGTGGATGACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCAGGGTCGGCCGAGAGCCCAGCA
GTGTCCCAACCGTAGTCACCGGGGAACTCACCAGTGAGGTAGCTCGGGGGCTCACCGGAGAATGGGCCTAGGTACTTGGCGCGGTCTGGACCATACCATG
GGCTCCCAGAGGAGACTGGCTTGCGGACGGCCTTCCTCATGGAGATTCTCCCATTGCCGAGAAGCTCGGGAGTGGAGGGGGAGAGCTTCACCGCCTGTCC
AGCCAGGGATGGAGAGGAGAGAGCCATGGTGGAAGCCGCCATTGTTGAGTGGATTTGAGAGCTTGACCTCTGTCTAGTGTTGAAATAGAGAGTTGAGATG
GATTGGCGATGGTTGTTGGGACTTGTT