« Back to Solanum tuberosum search


Detailed information on CNT3091168


BLAST search results

BLAST vs Swiss-Prot:
sp|P07370|CB2B_SOLLC, E-value = 3e-160

BLAST vs NONCODE:
NONSTUT001352, E-value = 6e-115

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30300916Solanum tuberosumTriticum aestivum73.1677.2783.97605forward
CNT30714756Solanum tuberosumMalus domestica golden64.0952.2286.04530forward
CNT30623002Solanum tuberosumDaucus carota76.5466.7787.05633forward
CNT3055180Solanum tuberosumAmborella trichopoda62.8850.3484.04520forward

Expression of CNT3091168

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MPLGLQQGLMGRSCHQGRVGRQPHQEVHQQYGIPQQLPSAQLGKPRWPRCSVHGPSLGCPSSQVHPR*

>peptide 2 (68 aa)
MDQAWVAQVVKSTLAENLGSGLEPHSLTKLDTITGQELREDTSKSTKHSPSAVDHLKFTVLGKGLRVC*

Sequence

>CNT3091168
TTTTTTCCCCTTTGATATGAAACTGACGGTATTTTCATTCATGCCATTGGAAAGTAAAATTATAGACTACACTATAATTGGAATATAAGAAAAATCCATT
CTATTGTCTAGTAAACTCACAATTACAACTTTACAAGGCCATCAAACAATCATCATATTCTTTGAGAACGTTTTATGATATTCATTTTCCGGGAACAAAG
TTTGTGGCGAAGGCCCAGGCATTGTTGTTAACTGGATCTGCAAGGTGGTCTGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCTTGAACAAAGA
ATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAA
GCTGCCACCAGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTATCCCTCAACAGCTCCCATCAGCACAACTTGGCAAGCCCAG
ATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAAATTTGGGATCCGGCCTTGAACCACACAGCCT
CACCAAACTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTT
CTTGGCAAAGGTCTCAGGGTCTGCTGAAAGGCCAGCGGTATCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAAT
GGGCCCAAGTACTTAACACGGTCAGGG