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Detailed information on CNT30520958


BLAST search results

BLAST vs Swiss-Prot:
sp|P09189|HSP7C_PETHY, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697339Setaria italicaOryza sativa18.4460.6189.88257forward
CNT30673056Setaria italicaSetaria viridis16.2172.4491.15226forward
CNT30616016Setaria italicaSesamum indicum14.3566.4583200forward
CNT3021461Setaria italicaCitrullus lanatus16.7140.181.55233forward
CNT30381739Setaria italicaManihot esculenta27.9153.4379.18389forward
CNT30630063Setaria italicaVigna unguiculata15.2135.8783.02212forward
CNT30168984Setaria italicaPistacia vera5.8825.6284.1582forward
CNT30283475Setaria italicaTriticum aestivum26.3346.8796.46367forward
CNT30223246Setaria italicaHordeum vulgare8.2545.190.43115forward
CNT30383257Setaria italicaTriticum turgidum27.2657.4994.21380forward
CNT30588413Setaria italicaMusa acuminata13.784.5191.62191forward
CNT30441947Setaria italicaAegilops tauschii31.5657.7489.09440forward
CNT30613976Setaria italicaArabis alpina23.3946.5784.05326forward
CNT30450032Setaria italicaSaccharum spontaneum27.3347.5791.34381forward
CNT3041011Setaria italicaChlamydomonas reinhardtii7.1735.5990100forward
CNT30231854Setaria italicaAnanas comosus18.5195.5690.7258forward
CNT3067065Setaria italicaLeersia perrieri12.6341.4193.18176forward
CNT30683744Setaria italicaTriticum urartu17.7955.6191.53248forward
CNT30368207Setaria italicaSorghum bicolor13.8572.2895.85193forward
CNT30621132Setaria italicaCajanus cajan11.4127.1885.53159forward
CNT30644072Setaria italicaCannabis sativa6.4620.1385.5690forward
CNT30325214Setaria italicaAsparagus officinalis6.7431.3387.2394forward
CNT30151237Setaria italicaBrachypodium distachyon14.8539.0690.82207forward
CNT30496988Setaria italicaDigitaria exilis36.3753.0389.55507forward
CNT30112153Setaria italicaFicus carica22.7435.2281.07317forward
CNT30114516Setaria italicaEutrema salsugineum4.6622.2693.8565forward

Expression of CNT30520958

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MAAAVGSLIMRITLRPEMTPASLVACLWESLK*

>peptide 2 (69 aa)
MLLHSSLPLKKSWSSCCTLGMRVEPPTSTTSCTLLLSILASRRHFSTGSMHLRKRSMFSSSNRARVMVV*

>peptide 3 (88 aa)
MPSYSESISMVVCAVDDSVRLARSQAVRRRRSARGLPLMSFLCLRLNSWTKWFTMRLSKSSPPRWVPPPRSKMSTFFSPLLVAFLSSP*

>peptide 4 (72 aa)
MVILFFCPVVLSSADTFRMPLASMSKQTVIWGTPRGAGGMPESSNLPRRLLSLVLARSPSYTWINTPGWLSE*

>peptide 5 (92 aa)
MGAATKVEDEHVLLAAAGGLLVEPVGDGRGSGLVDYAHHVEAGDDAGVLGGLPLGVVEVGRHGDHRVLDGGTEVGLGNLLHLGQHHRRDLLSR

>peptide 6 (90 aa)
LNSYHDATIDTTTTETTKTTRASGETHRWKHHVARNPSSSFILSSNSSASASWLLSSQLMAPSMASSMRFLSSAPSLEAILSSLMVLRML*

Sequence

>CNT30520958
CTAAACTCCTACCACGACGCCACCATTGACACGACCACGACAGAAACTACCAAGACAACACGAGCGAGCGGCGAAACACACAGGTGGAAGCATCACGTAG
CTCGGAACCCATCCAGCTCCTTCATCTTGTCCTCGAACTCGTCCGCCTCCGCGAGCTGGTTGCTGTCCAGCCAGCTGATGGCGCCGTCGATGGCCTCCTC
GATGCGCTTCTTGTCGTCGGCGCCCAGCTTGGAGGCGATCTTGTCGTCCTTGATGGTGTTGCGCATGTTGTAGGCGTAGTTCTCCAGGGCGTTCTTGGCG
TCCACCTTCTTCTTGTGCTCCTCGTCCTCCGCCTTGTACTTTTCCGCCTCCTGCACCATCTTCTCGATCTCCTCCTTGCTCAGCCGCCCCTTGTCGTTGG
TGATGGTGATCTTGTTCTTCTGCCCCGTCGTCTTGTCCTCCGCCGATACGTTCAGGATGCCGTTGGCGTCGATGTCGAAGCAGACCGTGATCTGGGGCAC
GCCGCGGGGCGCCGGAGGGATGCCGGAGAGCTCGAACTTGCCCAGGAGGTTGTTGTCCTTGGTCCTGGCGCGCTCGCCCTCGTACACCTGGATCAACACC
CCCGGCTGGTTGTCGGAGTAGGTGGAGAAGACCTGCTCCTTCTTTGTGGGGATGGTGGTGTTCCTCGGGATCAGCACGCGCCGTACGCCACGGCCTCGTC
GGGGTTGATGCTCTTGCACAGCTCCTTGCCGTTGAAGAAGTCCTGGAGCAGCTGCTGCACCTTGGGGATGCGGGTGGAGCCGCCCACGAGCACGACGTCG
TGCACGCTGCTCTTGTCCATCTTGGCGTCGCGGAGGCACTTCTCCACGGGCTCCATGCACTTGCGGAAGAGGTCCATGTTCAGCTCCTCGAACCGGGCGC
GGGTGATGGTGGTGTAGAAGTCGATGCCCTCGTACAGCGAGTCGATCTCGATGGTGGTCTGCGCCGTGGACGATAGCGTGCGCTTGGCGCGCTCGCAGGC
CGTCCGCAGGCGCCGCAGCGCGCGCGGGTTGCCGCTGATGTCCTTCTTGTGCTTGCGCTTGAACTCCTGGACGAAGTGGTTCACCATGCGGTTGTCGAAG
TCCTCACCACCCAGATGGGTGCCGCCACCAAGGTCGAAGATGAGCACGTTCTTCTCGCCGCTGCTGGTGGCCTTCTTGTCGAGCCCGTAGGCGATGGCCG
CGGCAGTGGGCTCGTTGATTATGCGCATCACGTTGAGGCCGGAGATGACGCCGGCGTCCTTGGTGGCCTGCCTCTGGGAGTCGTTGAAGTAGGCAGGCAC
GGTGACCACCGCGTTCTTGATGGTGGAACCGAGGTAGGCCTCGGCAATCTCCTTCATCTTGGTCAGCACCATAGAAGAGATCTCCTCAGCAGAG