Detailed information on CNT30368207


BLAST search results

BLAST vs Swiss-Prot:
sp|P11143|HSP70_MAIZE, E-value = 6e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520958Sorghum bicolorSetaria italica72.2813.8595.85193forward
CNT30515289Sorghum bicolorJuglans regia31.8417.7588.2485forward
CNT30381739Sorghum bicolorManihot esculenta31.4611.5490.4884forward
CNT30285585Sorghum bicolorTriticum aestivum71.1644.3988.95190forward
CNT30510806Sorghum bicolorSolanum lycopersicum32.5830.185.0687forward
CNT305922Sorghum bicolorZea mays83.5260.7689.24223forward
CNT30360803Sorghum bicolorLactuca sativa20.977.2687.556forward
CNT30572753Sorghum bicolorVitis vinifera33.336.3388.7689forward
CNT30576580Sorghum bicolorOryza barthii76.0349.0392.61203forward
CNT30112153Sorghum bicolorFicus carica31.469.3390.4884forward

Expression of CNT30368207

Peptides detected in this lncRNA

>peptide 1 (87 aa)
VHLGDDGVADALQLLHLILEFVCLRELVAVEPADGAVDGVLDALLVVRAQLGGDLVVLDGVAHVVGVVLQRVLGVHVELLEPGAGDGG

>peptide 2 (65 aa)
WYILAMMGLQMLSSSFILSSNSSASASWLLSSQLMAPSMASSMRFLSSAPSLEAILSSLMVLRML*

Sequence

>CNT30368207
TGGTACATCTTGGCGATGATGGGGTTGCAGATGCTCTCCAGCTCCTTCATCTTATCCTCGAATTCGTCTGCCTCCGCGAGCTGGTTGCTGTCGAGCCAGC
TGATGGCGCCGTCGATGGCGTCCTCGATGCGCTTCTTGTCGTCCGCGCCCAGCTTGGAGGCGATCTTGTCGTCCTTGATGGTGTTGCGCATGTTGTAGGC
GTAGTTCTCCAGCGAGTTCTTGGCGTCCATGTTGAGCTCCTCGAACCGGGCGCGGGTGATGGTGGTG