Detailed information on CNT30683744


BLAST search results

BLAST vs Swiss-Prot:
sp|P22953|HS701_ARATH, E-value = 3e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520958Triticum urartuSetaria italica55.6117.7991.53248forward
CNT30168984Triticum urartuPistacia vera18.6125.9485.5483forward
CNT30283475Triticum urartuTriticum aestivum30.0417.1188.06134forward
CNT30223130Triticum urartuHordeum vulgare26.9147.6297.5120forward
CNT30392820Triticum urartuTriticum turgidum28.716.7899.22128forward
CNT30568743Triticum urartuActinidia chinensis24.2234.6286.11108forward
CNT30510893Triticum urartuSolanum lycopersicum17.7138.5484.8179forward
CNT30614007Triticum urartuArabis alpina24.2217.8584.26108forward
CNT30451043Triticum urartuSaccharum spontaneum50.926.6487.22227forward
CNT304854Triticum urartuZea mays32.7466.0684.93146forward
CNT30231843Triticum urartuAnanas comosus26.4650.4388.98118forward
CNT30578217Triticum urartuOryza barthii24.2224.0583.33108forward

Expression of CNT30683744

Peptides detected in this lncRNA

>peptide 1 (43 aa)
IWGTPLGAGGIPESSNLPSRLLSLVLALSPSYTWMSTPGWLSE*

>peptide 2 (57 aa)
DLGDTPGRRWDPRELELAEQVVVLGPRPLALIHLDEHAGLVVRVAGASPAPSRCPRQ*

>peptide 3 (69 aa)
MLLQSSFPLKKSWRSCCTRGIRVDPPTRTTSCTVLLSILASRRHFSTGSMHLRKRSMLSSSNRARVMVV*

Sequence

>CNT30683744
TGATCTGGGGGACACCCCTGGGCGCCGGTGGGATCCCAGAGAGCTCGAACTTGCCGAGCAGGTTGTTGTCCTTGGTCCTCGCCCTCTCGCCCTCATACAC
CTGGATGAGCACGCCGGGCTGGTTGTCAGAGTAGCAGGAGCAAGTCCTGCACCTTCTCGTTGCCCTCGCCAGTGAGGATGGCAGCCTGAACGGCGGCTCC
GTACGCGACGGCCTCGTCAGGGTTGATGCTCTTGCAGAGCTCCTTCCCGTTAAAGAAGTCCTGGAGGAGCTGCTGCACACGGGGGATACGTGTGGATCCT
CCGACGAGGACAACGTCGTGCACGGTGCTCTTGTCCATCTTGGCGTCCCGGAGGCACTTCTCAACGGGCTCCATGCACTTGCGGAAGAGGTCCATGTTGA
GCTCCTCGAACCGGGCGCGGGTGATGGTAGTGTAGAAGTCGATGCC