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Detailed information on CNT30383257


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LHA8|HS704_ARATH, E-value = 2e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697339Triticum turgidumOryza sativa39.0360.8589.53258forward
CNT30520958Triticum turgidumSetaria italica57.4927.2694.21380forward
CNT30121888Triticum turgidumPhyscomitrium patens41.4516.6778.47274forward
CNT30283475Triticum turgidumTriticum aestivum38.7332.6999.61256forward
CNT30588413Triticum turgidumMusa acuminata28.984.5189.53191forward
CNT30450032Triticum turgidumSaccharum spontaneum62.0351.1990.49410forward
CNT305922Triticum turgidumZea mays36.6165.9490.5242forward
CNT30231854Triticum turgidumAnanas comosus21.3352.2291.49141forward
CNT30689574Triticum turgidumTriticum urartu10.8923.9287.572forward
CNT30369286Triticum turgidumOryza glumipatula44.7849.5890.54296forward
CNT30578076Triticum turgidumOryza barthii62.035187.56410forward
CNT30496988Triticum turgidumDigitaria exilis62.0342.8989.51410forward

Expression of CNT30383257

Peptides detected in this lncRNA

>peptide 1 (69 aa)
GTPNFKLKKREALSIKGSKPTSKHHHPSCLPDQTTPTNHYYYLQLDDTTTDDWHHRAASRGHRDRTPIK*

>peptide 2 (28 aa)
MVILFFCPVVLSSADTFRMPLASMSKHTV

>peptide 3 (41 aa)
MTRRQTTGTTERHPEDTETEHPSSSAQTLDEQLSPPPRSWR*

>peptide 4 (60 aa)
MMGLQMPSSSFILSSNSSASASWLASSQLMVPSIASSTFFLSSAPSLEAILSSLTVLRML*

Sequence

>CNT30383257
GGGGAACACCAAATTTTAAACTTAAAAAACGAGAAGCTCTAAGCATCAAGGGTTCCAAACCAACAAGCAAACATCATCATCCATCATGTCTTCCAGATCA
AACGACTCCAACGAACCACTACTACTACTTGCAGCTAGATGACACGACGACAGACGACTGGCACCACCGAGCGGCATCCAGAGGACACCGAGACAGAACA
CCCATCAAGTAGCGCGCAGACATTGGACGAACAGCTTAGTCCACCTCCTCGATCTTGGCGATGATGGGGTTGCAGATGCCCTCCAGCTCCTTCATCTTGT
CCTCGAACTCGTCGGCCTCGGCGAGCTGGTTGGCGTCCAGCCAGCTGATGGTGCCCTCGATCGCCTCCTCAACCTTCTTCTTGTCGTCGGCGCCGAGCTT
GGAGGCGATCTTGTCGTCCTTGACCGTGTTGCGCATGTTGTAGGCGTAGTTCTCCAGCGCGTTCTTGGCGTCCACCTTCTTCTTGTGCTCCTCGTCCTCC
GCCTTGTACCGCTCCGCCTCCTGCACCATCTTCTCGATCTCCTCCTTGCTCAGCCGCCCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTGCCCAGTCG
TCTTGTCCTCCGCCGACACGTTCAGGATGCCGTTGGCGTCGATGTCGAAGCACACCGTGAT