Detailed information on CNT30673056


BLAST search results

BLAST vs Swiss-Prot:
sp|P22953|HS701_ARATH, E-value = 4e-47

BLAST vs NONCODE:
NONVVIT003131, E-value = 5e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697339Setaria viridisOryza sativa69.8751.4289.45218forward
CNT30520958Setaria viridisSetaria italica72.4416.2191.15226forward
CNT30535317Setaria viridisEucalyptus grandis74.3640.9286.64232forward
CNT30630063Setaria viridisVigna unguiculata64.133.8484200forward
CNT30490395Setaria viridisOlea europaea69.8727.3283.49218forward
CNT30394244Setaria viridisTriticum turgidum74.6830.7890.56233forward
CNT30145283Setaria viridisMedicago truncatula27.8825.3685.0687forward
CNT30441947Setaria viridisAegilops tauschii71.1529.1390.09222forward
CNT30613976Setaria viridisArabis alpina76.634.1488.7239forward
CNT30450032Setaria viridisSaccharum spontaneum70.1927.3496.35219forward
CNT30231854Setaria viridisAnanas comosus50.9658.8989.31159forward
CNT30578217Setaria viridisOryza barthii78.5354.5788.98245forward
CNT30496988Setaria viridisDigitaria exilis78.2125.5294.26244forward

Expression of CNT30673056

Peptides detected in this lncRNA

>peptide 1 (59 aa)
HPTDATNQPTDRPTITRRSSPESSWTPPSSCAPRPLTCTSQRPAPSSRSPPWTDGPYRW*

>peptide 2 (36 aa)
TIQQTLLTNRPTDRPSRGVVLQRVLGLHLLLVLLVL*

>peptide 3 (42 aa)
MVILFFWPVVLSSAETFRMPLASMSKQTVIWGTPRGAGTVTTA

Sequence

>CNT30673056
ACCATCCAACAGACGCTACTAACCAACCGACCGACCGACCGACCATCACGAGGCGTAGTTCTCCAGAGAGTTCTTGGACTCCACCTTCTTCTTGTGCTCC
TCGTCCTCTGACTTGTACTTCTCAGCGTCCTGCACCATCTTCTCGATCTCCTCCTTGGACAGACGGCCCTTATCGTTGGTGATGGTGATCTTGTTCTTCT
GGCCCGTGGTCTTGTCCTCAGCGGAGACGTTCAGGATGCCGTTGGCGTCGATGTCGAAGCAGACAGTGATCTGGGGGACACCACGGGGAGCAGGAACGGT
GACAACAGCGTT