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Detailed information on CNT30283475


BLAST search results

BLAST vs Swiss-Prot:
sp|O65719|HSP7C_ARATH, E-value = 5e-90

BLAST vs NONCODE:
NONVVIT003131, E-value = 3e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697339Triticum aestivumOryza sativa26.8249.5389.52210forward
CNT30672564Triticum aestivumSetaria viridis36.0252.5190.78282forward
CNT30520958Triticum aestivumSetaria italica46.8726.3396.46367forward
CNT30535317Triticum aestivumEucalyptus grandis26.3136.3385.92206forward
CNT30616016Triticum aestivumSesamum indicum23.6361.4683.78185forward
CNT3021461Triticum aestivumCitrullus lanatus25.1633.9180.71197forward
CNT30381739Triticum aestivumManihot esculenta36.5339.2982.87286forward
CNT30630063Triticum aestivumVigna unguiculata27.0835.8781.13212forward
CNT30490395Triticum aestivumOlea europaea24.3923.9382.72191forward
CNT30223130Triticum aestivumHordeum vulgare14.4344.8487.61113forward
CNT30383257Triticum aestivumTriticum turgidum32.6938.7399.61256forward
CNT30568743Triticum aestivumActinidia chinensis9.3223.487.6773forward
CNT30588413Triticum aestivumMusa acuminata18.3963.7290.97144forward
CNT30510806Triticum aestivumSolanum lycopersicum11.3730.884.2789forward
CNT30441947Triticum aestivumAegilops tauschii46.4947.7788.46364forward
CNT30613976Triticum aestivumArabis alpina37.0441.4383.45290forward
CNT30450032Triticum aestivumSaccharum spontaneum27.9727.3492.69219forward
CNT30231854Triticum aestivumAnanas comosus33.3396.6789.66261forward
CNT3067065Triticum aestivumLeersia perrieri17.532.2491.24137forward
CNT30625375Triticum aestivumDaucus carota23.2478.4579.67182forward
CNT30683744Triticum aestivumTriticum urartu17.1130.0488.06134forward
CNT30621132Triticum aestivumCajanus cajan34.4846.1580.37270forward
CNT30595552Triticum aestivumOryza meridionalis11.4939.8288.8990forward
CNT30369286Triticum aestivumOryza glumipatula17.8823.4594.29140forward
CNT30154479Triticum aestivumPrunus persica11.4920.7493.3390forward
CNT30151237Triticum aestivumBrachypodium distachyon21.0731.1389.7165forward
CNT30578217Triticum aestivumOryza barthii36.463.4787.72285forward
CNT30582481Triticum aestivumEchinochloa crusgalli15.7126.3990.24123forward
CNT30496988Triticum aestivumDigitaria exilis43.6835.7788.01342forward
CNT30550306Triticum aestivumOryza brachyantha20.4339.5188.75160forward
CNT30112153Triticum aestivumFicus carica52.3645.5682.2410forward

Expression of CNT30283475

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MSSSMPMPPPMSGAAPWYILAMMGLQMPSSSFILSSNSSASASWLA*

>peptide 2 (69 aa)
GTPNFKLKKREALSIKGSKPTSKHHHPSCLSDQTTPTNHYYYLQLDDTTTDDWHHRAASRGHRDRTPIK*

>peptide 3 (70 aa)
MTRRQTTGTTERHPEDTETEHPSSSAQTLDEQLSPPPRSWGRRRQHRRACPRPCPCRRPCPARRPGTSWR*

>peptide 4 (72 aa)
MVILFFCPVVLSSADTFRMPLASMSKHTVIWGTPRGAGGMPESSNLPRRLLSLVLARSPSYTWIRTPGWLSE*

Sequence

>CNT30283475
GGAACACCAAATTTTAAACTTAAAAAACGAGAAGCTCTAAGCATCAAGGGTTCCAAACCAACAAGCAAACATCATCATCCATCATGTCTTTCAGATCAAA
CGACTCCAACGAACCACTACTACTACTTGCAGCTAGATGACACGACGACAGACGACTGGCACCACCGAGCGGCATCCAGAGGACACCGAGACAGAACACC
CATCAAGTAGCGCGCAGACATTGGACGAACAGCTTAGTCCACCTCCTCGATCTTGGGGCCGGCGCCGCCAGCACCGGCGGGCATGTCCTCGTCCATGCCC
ATGCCGCCGCCCATGTCCGGCGCGGCGCCCTGGTACATCTTGGCGATGATGGGGTTGCAGATGCCCTCCAGCTCCTTCATCTTGTCCTCGAACTCGTCGG
CCTCGGCGAGCTGGTTGGCGTAGTTCTCCAGCGCGTTCTTGGCGTCCACCTTCTTCTTGTGCTCCTCGTCCTCCGCCTTGTACCGCTCCGCCTCCTGCAC
CATCTTCTCGATCTCCTCCTTGCTCAGCCGCCCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTGCCCAGTCGTCTTGTCCTCCGCCGACACGTTCAGG
ATGCCGTTGGCGTCGATGTCGAAGCACACCGTGATCTGGGGCACGCCGCGGGGCGCCGGCGGGATGCCAGAGAGCTCGAACTTGCCCAGGAGGTTGTTGT
CCTTGGTCCTGGCGCGCTCGCCCTCGTACACCTGGATCAGGACGCCCGGCTGGTTGTCCGAGTAGGTGGAGAAGACCTGCTCC