« Back to Arabis alpina search


Detailed information on CNT30613976


BLAST search results

BLAST vs Swiss-Prot:
sp|P22953|HS701_ARATH, E-value = 6e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696916Arabis alpinaOryza sativa4386.7485.05301forward
CNT30673056Arabis alpinaSetaria viridis34.1476.688.7239forward
CNT30520958Arabis alpinaSetaria italica46.5723.3984.05326forward
CNT30535317Arabis alpinaEucalyptus grandis60.1474.2583.85421forward
CNT30616016Arabis alpinaSesamum indicum23.5754.8286.67165forward
CNT30381739Arabis alpinaManihot esculenta36.7135.382.1257forward
CNT30630063Arabis alpinaVigna unguiculata30.2935.8785.38212forward
CNT30490395Arabis alpinaOlea europaea71.1462.4182.33498forward
CNT30283475Arabis alpinaTriticum aestivum41.4337.0483.45290forward
CNT30224417Arabis alpinaHordeum vulgare12.4322.7789.6687forward
CNT30394244Arabis alpinaTriticum turgidum41.4338.3184.83290forward
CNT30568743Arabis alpinaActinidia chinensis11.142585.978forward
CNT30588413Arabis alpinaMusa acuminata25.5779.283.24179forward
CNT30441947Arabis alpinaAegilops tauschii36.7133.7386.77257forward
CNT30450032Arabis alpinaSaccharum spontaneum36.4331.8486.27255forward
CNT30138690Arabis alpinaLolium perenne3145.380.65217forward
CNT305922Arabis alpinaZea mays15.2929.1683.18107forward
CNT30231854Arabis alpinaAnanas comosus32.5784.4482.89228forward
CNT3067065Arabis alpinaLeersia perrieri24.5740.4786.05172forward
CNT30361391Arabis alpinaSorghum bicolor44.1436.9279.94309forward
CNT30621132Arabis alpinaCajanus cajan20.4324.4488.81143forward
CNT30360803Arabis alpinaLactuca sativa38.8635.2882.72272forward
CNT30369286Arabis alpinaOryza glumipatula2023.4588.57140forward
CNT30154479Arabis alpinaPrunus persica29.7147.9384.62208forward
CNT30151237Arabis alpinaBrachypodium distachyon29.4338.8786.41206forward
CNT30578076Arabis alpinaOryza barthii61.1453.2385.28428forward
CNT30496988Arabis alpinaDigitaria exilis6950.5282.82483forward
CNT30112153Arabis alpinaFicus carica41.2932.1185.12289forward

Expression of CNT30613976

Peptides detected in this lncRNA

>peptide 1 (34 aa)
QIPKKVLTKKYGKMGSTNKAQHKKVFNRFRIKAE*

>peptide 2 (30 aa)
MVILFFCPVVLSSAETLRIPFASMSKQTVI*

>peptide 3 (31 aa)
MACSIESSIFFLSAAGSFSPIFSSWMVFLML*

Sequence

>CNT30613976
CCAGATTCCAAAAAAGGTTCTAACAAAAAAGTACGGCAAAATGGGCTCCACTAACAAAGCCCAGCATAAAAAAGTCTTTAACAGATTCAGAATAAAAGCA
GAGTAAAAAAAGATAGAGATACTAAGAGAAGAGGACCAGGTCCGCCTGAAGAAGGAGGAGCATCATCATCCATACCACCAGCACCTGGACCGGCTTCACC
ACCAGCTCCTTGGTACATCTTAGCAATGATTGGGTTGCAAATGCTCTCCAACTCCTTCATCTTGTCTTCAAACTCATCAGCCTCAGCCAACTGGTTACCC
TCTAGCCACTGAATGGCTTGCTCAATCGAATCCTCGATCTTCTTCTTGTCAGCAGCAGGAAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCA
TGTTGTAAGCGTAGTTCTCAAGAGCGTTCTTGGCCTCAACCTTCTTCTTGTGCTCTTCATCTTCAGACTTGTACTTCTCAGCCTCTTGAACCATCTTCTC
GATCTCGTCCTTTGAGAGACGACCCTTGTCGTTAGTGATGGTGATCTTGTTCTTCTGTCCGGTGGTCTTGTCCTCAGCGGAAACGTTGAGGATACCATTT
GCGTCAATGTCGAAGCAGACAGTGATCTGAGGGACACCACGAGGAGCTGGTGGGATTCCAGAGAGCTCGAATTTACCGAGAAGGTTGTTGTCCTTGGTTC