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Detailed information on CNT30151237


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LHA8|HS704_ARATH, E-value = 5e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697339Brachypodium distachyonOryza sativa40.5750.7194.42215forward
CNT30672564Brachypodium distachyonSetaria viridis31.731.2891.07168forward
CNT30520958Brachypodium distachyonSetaria italica39.0614.8590.82207forward
CNT30535317Brachypodium distachyonEucalyptus grandis39.6237.0488.57210forward
CNT30616016Brachypodium distachyonSesamum indicum18.8733.2292100forward
CNT30381739Brachypodium distachyonManihot esculenta32.0823.3586.47170forward
CNT30630063Brachypodium distachyonVigna unguiculata29.8126.7386.08158forward
CNT30490395Brachypodium distachyonOlea europaea39.8126.4485.31211forward
CNT30121888Brachypodium distachyonPhyscomitrium patens23.47.5482.26124forward
CNT30283475Brachypodium distachyonTriticum aestivum31.1321.0789.7165forward
CNT30224417Brachypodium distachyonHordeum vulgare18.1125.1388.5496forward
CNT30394244Brachypodium distachyonTriticum turgidum32.2622.5992.98171forward
CNT30568743Brachypodium distachyonActinidia chinensis14.9125.3287.3479forward
CNT30588413Brachypodium distachyonMusa acuminata33.9679.6588.33180forward
CNT30510893Brachypodium distachyonSolanum lycopersicum18.1146.8385.4296forward
CNT30441947Brachypodium distachyonAegilops tauschii40.7528.3595.37216forward
CNT30613976Brachypodium distachyonArabis alpina38.8729.4386.41206forward
CNT30450032Brachypodium distachyonSaccharum spontaneum38.8725.7291.26206forward
CNT30231843Brachypodium distachyonAnanas comosus19.6244.4490.38104forward
CNT3067065Brachypodium distachyonLeersia perrieri39.0648.7189.37207forward
CNT30361391Brachypodium distachyonSorghum bicolor31.3219.8389.76166forward
CNT30621132Brachypodium distachyonCajanus cajan22.4520.3488.24119forward
CNT30369286Brachypodium distachyonOryza glumipatula31.3227.8190.36166forward
CNT30578217Brachypodium distachyonOryza barthii40.5747.8894.42215forward
CNT30496988Brachypodium distachyonDigitaria exilis40.1922.2889.67213forward
CNT30112153Brachypodium distachyonFicus carica30.3817.8985.71161forward

Expression of CNT30151237

Peptides detected in this lncRNA

>peptide 1 (45 aa)
KPNILINPRRRDVALVSNVPILVLPTITWSKIITRPQLKVSQTTI*

>peptide 2 (29 aa)
MPEPSMSAPAPWYILAIFSSLMVLRMLYE*

Sequence

>CNT30151237
CTAAACCGAATATATTAATCAATCCACGTCGCAGAGACGTGGCACTCGTTTCCAATGTTCCCATACTAGTACTACCGACCATCACTTGGTCCAAAATAAT
AACACGACCACAACTCAAAGTTTCACAGACCACGATATAATAGTAACCATACGACGATAACTAGCAGCAACGCATCAGCGCGCAGCTGCCACAAAACGAC
GGCGACTCGCTTAGTCGACCTCCTCGATCTTGGGGCCAGGGCCGCCGGAAGCAGCAGGGGTGTCTTCGTCCATGCCCGAGCCCTCCATGTCAGCACCGGC
GCCCTGGTACATCTTGGCGATCTTCTCGTCCTTGATGGTGTTGCGCATGTTGTACGAGTAGTTCTCCAGGGCGTTCTTGGACTCCACCTTCTTCTTGTGC
TCCTCATCCTCGGACTTATACTTCTCAGCCTCCTGGACCATCTTCTCAATCTCCTCCTTGCTCAGCCTGCCCTTGTCGTTGGTGATTGTGATCTTGTTCT
TCTGGCCAGTGGTCTTGTCCTCAGCAGACA