Detailed information on CNT30243897


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 1e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30386996Avena sativaTriticum turgidum55.2345.8492.34248forward
CNT30436081Avena sativaAegilops tauschii67.0458.994.35301forward
CNT30102749Avena sativaOryza rufipogon66.8243.2388.67300forward
CNT30581253Avena sativaEchinochloa crusgalli68.650.6690.91308forward

Expression of CNT30243897

Peptides detected in this lncRNA

>peptide 1 (53 aa)
IQNQTTFVHGLRVRPSCSRAYRTVYTARRPRLATDRALKRSPRCRRWWCAAGR*

>peptide 2 (51 aa)
MVVCSGSLRWVAQLLSGPLPVATMARRACLISASCRVSFFSGSAARPSGSK*

>peptide 3 (38 aa)
HTKPNHVRTRTTRSSILQPSLQNRIHCSTTETSDRPRA*

>peptide 4 (32 aa)
SYKTKPRSYTDYAFVHLAAELTEPYTLLDDRD*

Sequence

>CNT30243897
TCATACAAAACCAAACCACGTTCGTACACGGACTACGCGTTCGTCCATCTTGCAGCCGAGCTTACAGAACCGTATACACTGCTCGACGACCGAGACTAGC
GACCGACCGCGCGCTTAAGAGGAGCCCAAGGTGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGAGTGGGCCCTTGCCGG
TGGCGACCATGGCGAGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGGGTTTCCTTCTTCTCAGGGTCCGCCGCGAGGCCCAGCGGGTCGAAGTAGGAGCC
GCCGGGGTACAGCCGCCTCTCCGGGTCCAGCTCAGCGTTGCGCTGGAACTCGATGTAGCCGATCACCAGCACCTCGATCCAGATGAGCGTCGTGATCGTG
AAGGGCAGCGGCTGACCCAGGTACGACGACCCGTCAATCAGCTCCACCT