Detailed information on CNT30680980


BLAST search results

BLAST vs Swiss-Prot:
sp|P36494|CB4_SPIOL, E-value = 3e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672312Triticum urartuSetaria viridis32.2536.6689.35169forward
CNT30290500Triticum urartuTriticum aestivum99.05100.5894.99519forward
CNT30386996Triticum urartuTriticum turgidum99.4396.394.82521forward
CNT30244633Triticum urartuAvena sativa57.8256.0189.44303forward
CNT30659761Triticum urartuTriticum dicoccoides84.5492.6896.39443forward
CNT30450549Triticum urartuSaccharum spontaneum49.6270.2789.23260forward
CNT30338967Triticum urartuEragrostis tef32.2534.6390.53169forward
CNT30620951Triticum urartuCajanus cajan28.8214.5281.46151forward
CNT30596514Triticum urartuOryza meridionalis54.9618.0689.24288forward
CNT30370789Triticum urartuOryza glumipatula52.4819.9990.18275forward
CNT30328621Triticum urartuAsparagus officinalis12.2121.4887.564forward
CNT30147796Triticum urartuBrachypodium distachyon26.5335.0194.96139forward
CNT30580706Triticum urartuEchinochloa crusgalli44.4736.9893.56233forward
CNT30116951Triticum urartuOryza nivara52.4818.5989.82275forward
CNT30556512Triticum urartuPanicum hallii28.2430.5290.54148forward
CNT3039307Triticum urartuMarchantia polymorpha27.8643.9880.82146forward

Expression of CNT30680980

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MYPITSTSIQISVVSVNGSGCPRYDDPSTSST

>peptide 2 (86 aa)
MVVCSGSLRWAGVLDLRQLQSLLLLRVRRETQRVEVGATGVEPPLRVQLRVALELDVPDHQHLDPDQRGERERQRLPQVRRPVHQLH

Sequence

>CNT30680980
GCTCAAGATTGATGTACAAGTGGATGCATTAAGTCACCATTGGTTCATATTTTACAAATCACCAAGTCCCAGCAGCTCTCCTATGTGATCAGACCTGCAT
TACTCAACAAAGGATCTTTGCGATACCCTCTCATCCATCACTCGTCATATACAAAACGAAAAGCACGTTCGTTACACGGACGCGCGTTCGTCCATTTTGC
AGCCGAGCTGACAGAAATTGCTCGACCACCGACCACTTAAGAGGAGCCCAAGGTGTCAAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGCGGGCGTG
CTTGATCTCCGCCAGCTGCAGAGTCTCCTTCTTCTCCGGGTCCGCCGCGAGACCCAGCGGGTCGAAGTAGGAGCCACCGGGGTAGAGCCTCCTCTCCGGG
TCCAGCTCCGCGTTGCGCTGGAACTCGATGTACCCGATCACCAGCACCTCGATCCAGATCAGCGTGGTGAGCGTGAACGGCAGCGGCTGCCCCAGGTACG
ACGACCCGTCCACCAGCTCCACCT