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Detailed information on CNT30338967


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672312Eragrostis tefSetaria viridis38.9341.2196.84190forward
CNT30533752Eragrostis tefEucalyptus grandis8.812093.0243forward
CNT30290500Eragrostis tefTriticum aestivum34.6332.7590.53169forward
CNT30386996Eragrostis tefTriticum turgidum33.6130.3190.24164forward
CNT30436840Eragrostis tefAegilops tauschii38.5246.4287.23188forward
CNT30244633Eragrostis tefAvena sativa34.6331.2491.72169forward
CNT30659570Eragrostis tefTriticum dicoccoides32.3828.8389.87158forward
CNT30131950Eragrostis tefLolium perenne36.2734.5793.22177forward
CNT30229777Eragrostis tefAnanas comosus28.0718.6683.94137forward
CNT30680980Eragrostis tefTriticum urartu34.6332.2590.53169forward
CNT30147796Eragrostis tefBrachypodium distachyon32.3839.889.24158forward
CNT30102749Eragrostis tefOryza rufipogon29.5120.7590.28144forward
CNT30580706Eragrostis tefEchinochloa crusgalli34.6326.8393.49169forward
CNT30556512Eragrostis tefPanicum hallii38.9339.1892.11190forward

Expression of CNT30338967

Peptides detected in this lncRNA

>peptide 1 (35 aa)
PGRFRIIPKDRCTSECINSSLVHILHITKKFQQFS*

>peptide 2 (37 aa)
IQAGFVSSQKIDVQVNALIHHWFIYYTSPRSSSSSPN*

>peptide 3 (47 aa)
MNKDHRVPIPSRSPQNQTTHAFIHLEHILIDGWIGAESNIRMALIIN*

Sequence

>CNT30338967
ATCCAGGCCGGTTTCGTATCATCCCAAAAGATCGATGTACAAGTGAATGCATTAATTCATCATTGGTTCATATATTACACATCACCAAGAAGTTCCAGCA
GTTCTCCTAATTAACCATACATCCTCCATTAAGAACATGAACAAAGATCATCGTGTCCCCATACCCTCTCGCTCGCCACAAAATCAAACGACGCACGCGT
TCATCCATCTCGAGCACATTCTCATCGACGGATGGATCGGAGCAGAAAGCAATATACGGATGGCCTTAATTATTAATTAAGAGGATCCGGAGGAGAAGGT
GTCGAAGATGGTGGTGCCGAGCGGGTCGAAGTAGGAGCCGCCCGGGTAGATCCTCCTCTCCGGGTCGAGCTCGGCGTTGCGCTGGAACTCGATGTAGCCG
ATCACCAGCACCTCGATCCAGATGAGCGTCGAGATGGAGAAGGGCAGCGGCTGGCCCAGGTAGGACGACCCGTCCACCAGCTCAACCT