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Detailed information on CNT30581456


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 1e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695194Echinochloa crusgalliOryza sativa55.334.3896.54318forward
CNT30221568Echinochloa crusgalliHordeum vulgare55.6530.5688.75320forward
CNT30386996Echinochloa crusgalliTriticum turgidum42.6145.2992.24245forward
CNT30562751Echinochloa crusgalliActinidia chinensis3649.7683.09207forward
CNT30453511Echinochloa crusgalliSaccharum spontaneum57.9163.1993.99333forward
CNT30219415Echinochloa crusgalliKalanchoe fedtschenkoi37.2268.5981.31214forward
CNT30338974Echinochloa crusgalliEragrostis tef25.0431.6597.92144forward
CNT30596639Echinochloa crusgalliOryza meridionalis49.9117.3496.17287forward
CNT30577064Echinochloa crusgalliOryza barthii45.3934.1696.93261forward
CNT30116951Echinochloa crusgalliOryza nivara40.715.8295.73234forward
CNT3039307Echinochloa crusgalliMarchantia polymorpha19.8334.3482.46114forward

Expression of CNT30581456

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MYPITSTSIQISVEIEKGSGCPRYDDPSTSS

>peptide 2 (50 aa)
MVLLSGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGSDASPSGSK*

>peptide 3 (53 aa)
CIDSSLVHILQMTKSQALLINATSINKGLDRIHHLPIPSHSSSQNDTVPSISS*

Sequence

>CNT30581456
ATGCATTGATTCATCACTGGTTCATATATTACAAATGACCAAGTCCCAAGCTCTCCTAATTAACGCGACCTCCATTAACAAAGGACTAGATCGGATCCAC
CATCTTCCCATACCCTCTCACTCGTCATCACAAAATGATACAGTACCATCCATCTCCAGCTGATGATAGAGATCACGGTTAATTAATTCAAGAACATCAC
GTTTCGGACGTACGGATCGACGCATGGATATATGGGCCGGGCTTAAGAGGATCCTCCGAAGGTGTCGAAGATGGTGTTGTTGAGCGGGCCCTTGCCGGTG
GCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCCGACG
CCAGCCCCAGCGGGTCGAAGTAGGACCCGCCCGGGTACAGCCTCTTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACTCGATGTACCCGATCACCAGCAC
CTCGATCCAGATCAGCGTCGAGATCGAGAAGGGCAGCGGCTGCCCCAGGTACGACGACCCGTCCACCAGCTCCAC