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Detailed information on CNT30358630


BLAST search results

BLAST vs Swiss-Prot:
sp|Q56WH1|TBA3_ARATH, E-value = 1e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677660Lactuca sativaSetaria viridis50.5144.384.34198forward
CNT30522342Lactuca sativaSetaria italica63.2742.1883.06248forward
CNT30517711Lactuca sativaJuglans regia41.0730.3885.71161forward
CNT30702815Lactuca sativaQuercus lobata30.8732.8880.99121forward
CNT30372454Lactuca sativaArabidopsis thaliana57.6547.2883.19226forward
CNT3021397Lactuca sativaCitrullus lanatus25.7715.2683.17101forward
CNT30504800Lactuca sativaNicotiana attenuata83.4273.9880.43327forward
CNT30709049Lactuca sativaGlycine max36.4820.6386.01143forward
CNT3086234Lactuca sativaVigna radiata51.0237.7483200forward
CNT30144939Lactuca sativaMedicago truncatula42.0933.8888.48165forward
CNT30247574Lactuca sativaAvena sativa21.9417.784.8886forward
CNT3059767Lactuca sativaArabidopsis lyrata61.9934.2781.89243forward
CNT30265526Lactuca sativaBrassica rapa64.0325.2882.47251forward
CNT30446069Lactuca sativaSaccharum spontaneum59.6910.3281.2234forward
CNT3016707Lactuca sativaZea mays63.2741.3381.05248forward
CNT30624589Lactuca sativaDaucus carota28.0622.1888.18110forward
CNT30361568Lactuca sativaSorghum bicolor63.2735.8981.45248forward
CNT30481833Lactuca sativaChara braunii33.4244.4180.92131forward
CNT30430260Lactuca sativaPapaver somniferum36.4824.5784.62143forward
CNT30570286Lactuca sativaVitis vinifera40.5632.3285.53159forward
CNT3022486Lactuca sativaPopulus trichocarpa60.237.8282.63236forward
CNT30333509Lactuca sativaCynara cardunculus59.4442.3686.27233forward

Expression of CNT30358630

Peptides detected in this lncRNA

>peptide 1 (31 aa)
DITKSHNHHFNQYSSSSSAPSSSTPSAPTSS*

Sequence

>CNT30358630
GATATAACTAAAAGCCACAACCACCATTTTAATCAATACTCTTCATCATCATCAGCACCATCATCATCAACACCTTCAGCACCAACCTCCTCATAATCTT
TCTCAAGAGCTGCAAGATCTTCACGCGCTTCTGAAAACTCACCTTCCTCCATTCCTTCACCAACATACCAATGAACAAACGCCCTCTTAGCATACATAAG
GTCAAACTTATGGTCAATGCGTGAAAACACTTCAGCAACAGCTGTGTTGTTGCTTATCATGCAAACTGCTCTTTGAACTTTAGCAAGATCACCCCCTGGA
ACAACTGTTGGTGGTTGGTAGAACTGATAATTGTTCATGGTAAGCTTTTTCAGCTGAGATCACAGGGGCATATGAGGAAAGCATGAAATGGA