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Detailed information on CNT3086234


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677932Vigna radiataSetaria viridis50.1935.7583.08266forward
CNT30640127Vigna radiataNymphaea colorata47.9231.8387.4254forward
CNT30517711Vigna radiataJuglans regia34.3434.3485.71182forward
CNT30702815Vigna radiataQuercus lobata30.3843.7583.23161forward
CNT30371538Vigna radiataArabidopsis thaliana56.4262.9584.28299forward
CNT30379228Vigna radiataManihot esculenta52.0831.6587.68276forward
CNT30504800Vigna radiataNicotiana attenuata37.7445.2587200forward
CNT30709049Vigna radiataGlycine max53.2140.6992.55282forward
CNT30284381Vigna radiataTriticum aestivum52.6436.5287.1279forward
CNT30224654Vigna radiataHordeum vulgare50.1917.4282.71266forward
CNT30391523Vigna radiataTriticum turgidum58.8742.3383.65312forward
CNT30144939Vigna radiataMedicago truncatula35.2838.487.7187forward
CNT30247087Vigna radiataAvena sativa59.2542.986.31314forward
CNT30655883Vigna radiataTriticum dicoccoides57.1742.4486.14303forward
CNT3059767Vigna radiataArabidopsis lyrata37.7428.2184.5200forward
CNT3075301Vigna radiataBrassica juncea30.9430.8987.2164forward
CNT3041219Vigna radiataChlamydomonas reinhardtii25.4723.6882.96135forward
CNT30229012Vigna radiataAnanas comosus38.324.4985.71203forward
CNT30219368Vigna radiataKalanchoe fedtschenkoi31.5128.687.43167forward
CNT30204030Vigna radiataHelianthus annuus38.348.9285.71203forward
CNT30689745Vigna radiataTriticum urartu52.6436.6186.74279forward
CNT30720138Vigna radiataTriticum spelta31.5148.5588.02167forward
CNT30597159Vigna radiataOryza meridionalis32.0823.4882.94170forward
CNT30358630Vigna radiataLactuca sativa37.7451.0283200forward
CNT30371350Vigna radiataOryza glumipatula49.6232.0780.61263forward
CNT30482824Vigna radiataChara braunii47.3632.9880.08251forward
CNT30430260Vigna radiataPapaver somniferum33.7730.7687.71179forward
CNT30571197Vigna radiataVitis vinifera50.9468.5387.41270forward
CNT3024728Vigna radiataPopulus trichocarpa44.7229.1987.76237forward
CNT30103809Vigna radiataOryza rufipogon32.0823.3883.53170forward
CNT30575513Vigna radiataOryza barthii36.626.0182.47194forward
CNT30593783Vigna radiataEragrostis curvula35.6635.882.01189forward
CNT30333509Vigna radiataCynara cardunculus37.7436.3682.5200forward

Expression of CNT3086234

Peptides detected in this lncRNA

>peptide 1 (30 aa)
DQYPLVKEEGEFPEKNNHTLSTGRKTTRPK*

>peptide 2 (34 aa)
MREKTSTTLVELEIMHTALCTFARSPPGTTVGAW*

>peptide 3 (95 aa)
MYKRPLSIHQVKFMVNARENLNNTGGVGDHAYSPLHLRKITTWNNSWGLVVDSTLEPSGAPVNKLNGALSLDNAHSCINIFRHHQTSGKQSVRISP

Sequence

>CNT3086234
GACCAATATCCCTTAGTAAAGGAAGAGGGAGAGTTCCCTGAAAAGAACAACCATACGCTGAGCACGGGAAGAAAAACAACACGACCAAAGTAACATTACA
GTTTTGTAAGTAGAAAAATATAACATAATAGTGCAAATATCTTCTGATCAATAATCTTCTCCTTCTTCATCTTCACCGGCAGCAAGATCTTCACGAGCCT
CAGAGAACTCTCCCTCTTCCATACCCTCACCAACATACCAATGTACAAACGCCCTCTTAGCATACATCAGGTCAAATTTATGGTCAATGCGAGAGAAAAC
CTCAACAACACTGGTGGAGTTGGAGATCATGCATACAGCCCTCTGCACCTTCGCAAGATCACCACCTGGAACAACAGTTGGGGCCTGGTAGTTGATTCCA
CACTTGAACCCAGTGGGGCACCAGTCAACAAATTGAATGGTGCGCTTAGTCTTGATAATGCCCACAGCTGCATTAACATCTTTAGGCACCATCAAACCTC
AGGGAAGCAGTCAGTGAGGATATCACCTGA