Detailed information on CNT30247574


BLAST search results

BLAST vs Swiss-Prot:
sp|P33629|TBA_PRUDU, E-value = 5e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535442Avena sativaEucalyptus grandis20.373.6786.8799reverse complement
CNT3041114Avena sativaChlamydomonas reinhardtii20.3714.0892.9399forward
CNT30358630Avena sativaLactuca sativa17.721.9484.8886forward

Expression of CNT30247574

Peptides detected in this lncRNA

>peptide 1 (52 aa)
SIGKQTLNSDATRKNTRQENFEARMTEHIKRDTCSTEVLMKQFNTDTESAQA*

>peptide 2 (56 aa)
MPSPTYQCTKARLAYMRSNLWSMREKTSTTLVELEIMQTALCTLARSPPGTTVGGW*

Sequence

>CNT30247574
GAGCATAGGCAAGCAAACGCTAAATTCTGATGCAACCAGAAAGAACACACGGCAGGAAAATTTTGAAGCAAGAATGACAGAACATATTAAGCGAGATACT
TGTTCCACGGAAGTATTAATGAAGCAGTTCAACACCGACACAGAAAGCGCTCAGGCTTAACAACTCGAGACCCAGACACAAGTTCCAAGAACAGGGACAG
CACAGCAACACACTAAAAGATAGGCAGAGGAGTAGATTCATCCTCTGACGAGCAGATCAGTCCTCACGGGCCTCAGAGAACTCACCCTCCTCCATGCCCT
CACCGACATACCAGTGCACGAAGGCACGCTTGGCATACATGAGGTCAAACTTGTGGTCAATGCGGGAGAAGACCTCGACAACGCTGGTGGAGTTGGAGAT
CATGCAGACCGCCCTCTGCACCTTGGCAAGGTCACCGCCAGGCACCACAGTGGGTGGCTGGTAGTTGATGCCGCACTTGAAGCCCG