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Detailed information on CNT30333509


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43473|TBA1_HORVU, E-value = 3e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671561Cynara cardunculusSetaria viridis40.9165.9886.22225forward
CNT30522342Cynara cardunculusSetaria italica42.3639.6381.97233forward
CNT30640127Cynara cardunculusNymphaea colorata39.6427.3282.11218forward
CNT30532757Cynara cardunculusEucalyptus grandis38.9148.6478.5214forward
CNT30517711Cynara cardunculusJuglans regia27.6428.6883.55152forward
CNT30702815Cynara cardunculusQuercus lobata2029.8985.45110forward
CNT30377837Cynara cardunculusArabidopsis thaliana48.1867.0983.4265forward
CNT30618173Cynara cardunculusSesamum indicum21.6415.0184.87119forward
CNT3021397Cynara cardunculusCitrullus lanatus21.8218.1385120forward
CNT30379228Cynara cardunculusManihot esculenta42.9127.0680.93236forward
CNT30504800Cynara cardunculusNicotiana attenuata27.6434.3982.89152forward
CNT30709049Cynara cardunculusGlycine max40.7332.3283.93224forward
CNT30295550Cynara cardunculusTriticum aestivum27.6421.8785.53152forward
CNT30224654Cynara cardunculusHordeum vulgare27.099.7683.89149forward
CNT30391523Cynara cardunculusTriticum turgidum27.6420.6285.53152forward
CNT3086234Cynara cardunculusVigna radiata36.3637.7482.5200forward
CNT30553152Cynara cardunculusOryza glaberrima2015.983.64110forward
CNT30144939Cynara cardunculusMedicago truncatula28.7332.4481.65158forward
CNT30439881Cynara cardunculusAegilops tauschii23.6416.9583.85130forward
CNT30247087Cynara cardunculusAvena sativa40.7330.682.59224forward
CNT30655738Cynara cardunculusTriticum dicoccoides27.6422.5985.53152forward
CNT3059767Cynara cardunculusArabidopsis lyrata28.7322.2884.81158forward
CNT30265527Cynara cardunculusBrassica rapa28.7325.6584.18158forward
CNT30451548Cynara cardunculusSaccharum spontaneum57.6416.6683.6317forward
CNT30136973Cynara cardunculusLolium perenne19.2725.2485.85106forward
CNT3016707Cynara cardunculusZea mays35.2732.3384.02194forward
CNT3041114Cynara cardunculusChlamydomonas reinhardtii2217.2182.64121forward
CNT30229012Cynara cardunculusAnanas comosus43.0928.5983.54237forward
CNT30219368Cynara cardunculusKalanchoe fedtschenkoi23.4522.0983.72129forward
CNT30204030Cynara cardunculusHelianthus annuus26.9135.6687.16148forward
CNT30624589Cynara cardunculusDaucus carota18.9120.9785.58104forward
CNT30689745Cynara cardunculusTriticum urartu27.6419.9586.18152forward
CNT30720142Cynara cardunculusTriticum spelta24.1837.1583.46133forward
CNT30361568Cynara cardunculusSorghum bicolor35.2728.0882.47194forward
CNT30358630Cynara cardunculusLactuca sativa42.3659.4486.27233forward
CNT30481833Cynara cardunculusChara braunii23.8244.4185.5131forward
CNT30430260Cynara cardunculusPapaver somniferum28.7327.1583.54158forward
CNT30570286Cynara cardunculusVitis vinifera27.6430.8986.18152forward
CNT3056297Cynara cardunculusAmborella trichopoda22.5538.6384.68124forward
CNT30106557Cynara cardunculusOryza longistaminata18.9148.686.54104forward
CNT3022486Cynara cardunculusPopulus trichocarpa28.7325.3283.54158forward
CNT30100887Cynara cardunculusOryza rufipogon27.6419.7482.89152forward
CNT30578254Cynara cardunculusOryza barthii17.8235.1385.7198forward
CNT30582828Cynara cardunculusEchinochloa crusgalli27.2717.4884150forward
CNT30724701Cynara cardunculusLupinus angustifolius26.5512.9384.93146forward

Expression of CNT30333509

Peptides detected in this lncRNA

>peptide 1 (57 aa)
QPLHSLSPELQDLHGLPRTRPPPYPHPRTNERMPFSHTSDQTCGQCVRTPLQPLCCC*

>peptide 2 (46 aa)
NLFIVFLQSCKIFTGFRELALLHTLTHVPMNECPFRIHQIKLVVNA*

>peptide 3 (35 aa)
MLAGSKTAFVISGTDSCSWYAFSAEITGAYEESMK*

>peptide 4 (32 aa)
MPRITLSHHACRLENCIRDFRYRQLLMVRFLG*

Sequence

>CNT30333509
CCAACCTCTTCATAGTCTTTCTCCAGAGCTGCAAGATCTTCACGGGCTTCCGAGAACTCGCCCTCCTCCATACCCTCACCCACGTACCAATGAACGAATG
CCCTTTTCGCATACATCAGATCAAACTTGTGGTCAATGCGTGAGAACACCTCTGCAACCGCTGTGTTGTTGCTGATCATGCAAACGGCCCGTTGAACCTT
GGCAAGATCACCACCTGGCACAACCGTTGGTGGCTGCAGCGTTAACATCTTTGGGGACAACATCTCCACGATACATCAAGCAACACGCCATATACTTGCC
ATGCCTAGGATCACACTTAGCCATCATGCTTGCAGGCTCGAAAACTGCATTCGTGATTTCAGGTACCGACAGCTGCTCATGGTACGCTTTCTCGGCTGAG
ATCACAGGGGCGTATGAGGAAAGCATGAAATGAATACGTGGGTATGGCACAAGATTGGTCTGGAACTCAGTAATATCAACATTAATAGCTCCATCAAACC
GTAGAGAGGTTGTTAAAGATGATATGATTTGAGAGATGAGTCTATTCAAG