Detailed information on CNT30677660


BLAST search results

BLAST vs Swiss-Prot:
sp|P84549|TBA_POPEU, E-value = 6e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522342Setaria viridisSetaria italica60.6346.0999.26271forward
CNT3059767Setaria viridisArabidopsis lyrata40.7225.6786.81182forward
CNT30446069Setaria viridisSaccharum spontaneum59.7311.7794.01267forward
CNT3016707Setaria viridisZea mays59.7344.594.76267forward
CNT30344814Setaria viridisEragrostis tef40.7245.7386.26182forward
CNT30361568Setaria viridisSorghum bicolor59.7338.6494.01267forward
CNT30358630Setaria viridisLactuca sativa44.350.5184.34198forward

Expression of CNT30677660

Peptides detected in this lncRNA

>peptide 1 (42 aa)
PKENKHASRSDDSIFSFILIVFNFSSNFLIILLQCCKILPCL*

>peptide 2 (35 aa)
MRSNLRSIREKTSATAVLLLIMQTARWSGTQLCQH*

>peptide 3 (29 aa)
LRKISMLPDQMTQYSASSSSSSTSAPTSS*

>peptide 4 (59 aa)
MNKCTLCIHEIKLAVNTGEDLSHGCVVADHADCSLVWNSVMSTLIAPSNLNEVVRDDIT*

Sequence

>CNT30677660
ACCTAAGGAAAATAAGCATGCTTCCAGATCAGATGACTCAATATTCAGCTTCATCCTCATCGTCTTCAACTTCAGCTCCAACTTCCTCATAATCCTTCTC
CAGTGCTGCAAGATCCTCCCTTGCCTCTGAGAACTCACCTTCTTCCATCCCTTCACCGACATACCAATGAACAAATGCACGCTTTGCATACATGAGATCA
AACTTGCGGTCAATACGGGAGAAGACCTCAGCCACGGCTGTGTTGTTGCTGATCATGCAGACTGCTCGTTGGTCTGGAACTCAGTTATGTCAACATTAAT
AGCTCCGTCAAACCTCAACGAGGTGGTCAGAGATGATATAACTTGAGATATAAGCCTGTTCAAGTTGGTGTATGTTGGACGCTCAATGTCGAGGGACCTC
TTGCATATGTCATAGATAGCTTCATTGTCAAGAAGCACAACGACATC