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Detailed information on CNT30504800


BLAST search results

BLAST vs Swiss-Prot:
sp|P20364|TBB1_DAUCA, E-value = 2e-18

BLAST vs NONCODE:
NONGMAT000219, E-value = 2e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677785Nicotiana attenuataSetaria viridis35.5250.1685.99157forward
CNT30522342Nicotiana attenuataSetaria italica36.8827.7283.44163forward
CNT30640127Nicotiana attenuataNymphaea colorata47.2926.1986.6209forward
CNT30517711Nicotiana attenuataJuglans regia48.6440.5787.44215forward
CNT30702815Nicotiana attenuataQuercus lobata36.4343.7585.71161forward
CNT3021397Nicotiana attenuataCitrullus lanatus33.4822.3683.11148forward
CNT30727926Nicotiana attenuataCorchorus capsularis91.6355.5682.72405forward
CNT30224654Nicotiana attenuataHordeum vulgare318.9786.13137forward
CNT3086234Nicotiana attenuataVigna radiata45.2537.7487200forward
CNT30553152Nicotiana attenuataOryza glaberrima32.3520.6684.62143forward
CNT30144939Nicotiana attenuataMedicago truncatula49.7745.1786.82220forward
CNT3059767Nicotiana attenuataArabidopsis lyrata53.6233.4386.92237forward
CNT30229012Nicotiana attenuataAnanas comosus51.1327.2684.51226forward
CNT30204030Nicotiana attenuataHelianthus annuus88.6994.4684.18392forward
CNT30624589Nicotiana attenuataDaucus carota20.8118.5589.1392forward
CNT30720142Nicotiana attenuataTriticum spelta35.5243.8587.26157forward
CNT30340361Nicotiana attenuataEragrostis tef35.5230.0282.8157forward
CNT30358630Nicotiana attenuataLactuca sativa75.5785.280.54334forward
CNT30369826Nicotiana attenuataOryza glumipatula41.8636.1384.86185forward
CNT30482824Nicotiana attenuataChara braunii38.0122.0881.55168forward
CNT30430260Nicotiana attenuataPapaver somniferum47.2935.9187.08209forward
CNT30571197Nicotiana attenuataVitis vinifera51.8158.1286.46229forward
CNT3056297Nicotiana attenuataAmborella trichopoda29.6440.8185.5131forward
CNT30106557Nicotiana attenuataOryza longistaminata35.5273.3684.08157forward
CNT3022486Nicotiana attenuataPopulus trichocarpa52.7137.3487.98233forward
CNT30100634Nicotiana attenuataOryza rufipogon42.5354.0285.11188forward
CNT30578254Nicotiana attenuataOryza barthii35.5256.2783.44157forward
CNT30333509Nicotiana attenuataCynara cardunculus34.3927.6482.89152forward

Expression of CNT30504800

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDPGVRHKIGLEFIHINIQSTIKPQRCCE*

>peptide 2 (42 aa)
MTGAYEESIKWILGYGTRLVWNSFTSTFKAPSNLKDAVSEEIT

>peptide 3 (56 aa)
SLPFIITFSTNLLIILLQGSKIFTSFTEFTFLHALTNIPMDKSTLGVHQIKLMVNA*

>peptide 4 (65 aa)
MPSPTYQWTKARLAYIRSNLWSMREKTSATLVELEIMQTALCTLARSPPGTTALLVISATESCSW*

Sequence

>CNT30504800
CTCCCTCCCCTTCATCATCACCTTCAGCACCAACCTCCTCATAATCCTTCTCCAAGGCAGCAAGATCTTCACGAGCTTCACTGAATTCACCTTCCTCCAT
GCCCTCACCAACATACCAATGGACAAAAGCACGCTTGGCGTACATCAGATCAAACTTATGGTCAATGCGTGAGAAGACCTCAGCGACACTGGTTGAGTTG
GAAATCATGCAAACAGCCCTCTGCACCTTAGCAAGATCGCCACCAGGAACAACAGCACTGTTGGTGATCTCTGCAACTGAGAGCTGTTCATGGTAGGCCT
TCTCAGCAGAAATGACAGGAGCATATGAGGAAAGCATAAAATGGATCCTGGGGTACGGCACAAGATTGGTCTGGAATTCATTCACATCAACATTCAAAGC
ACCATCAAACCTCAAAGATGCTGTGAGTGAAGAGATAACCTG