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Detailed information on CNT3021397


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678532Citrullus lanatusSetaria viridis13.4425.7289.8989forward
CNT30522342Citrullus lanatusSetaria italica17.9820.2481.51119forward
CNT30532757Citrullus lanatusEucalyptus grandis17.5226.3683.62116forward
CNT30517711Citrullus lanatusJuglans regia17.0721.3286.73113forward
CNT30702815Citrullus lanatusQuercus lobata14.526.0989.5896forward
CNT30371538Citrullus lanatusArabidopsis thaliana15.2621.2682.18101forward
CNT30618174Citrullus lanatusSesamum indicum17.9827.5581.51119forward
CNT30727513Citrullus lanatusCorchorus capsularis10.5721.5491.4370forward
CNT30504800Citrullus lanatusNicotiana attenuata22.3633.4883.11148forward
CNT30712809Citrullus lanatusGlycine max12.9925.6784.8886forward
CNT30223592Citrullus lanatusHordeum vulgare12.2420.7786.4281forward
CNT30144939Citrullus lanatusMedicago truncatula17.5223.8284.48116forward
CNT30265527Citrullus lanatusBrassica rapa19.0320.4584.92126forward
CNT30444717Citrullus lanatusSaccharum spontaneum17.9822.4181.51119forward
CNT30136247Citrullus lanatusLolium perenne10.2722.2286.7668forward
CNT30204030Citrullus lanatusHelianthus annuus13.4421.4589.8989forward
CNT30689749Citrullus lanatusTriticum urartu17.0722.8386.73113forward
CNT30344814Citrullus lanatusEragrostis tef18.2830.481.82121forward
CNT30361568Citrullus lanatusSorghum bicolor23.8722.8780.38158forward
CNT30597037Citrullus lanatusOryza meridionalis16.1620.4284.11107forward
CNT30358630Citrullus lanatusLactuca sativa20.6934.9581.75137forward
CNT30371253Citrullus lanatusOryza glumipatula15.1132.5782100forward
CNT30430260Citrullus lanatusPapaver somniferum19.0321.6587.3126forward
CNT30570286Citrullus lanatusVitis vinifera19.0325.6187.3126forward
CNT3056297Citrullus lanatusAmborella trichopoda15.7132.484.62104forward
CNT3022486Citrullus lanatusPopulus trichocarpa20.3921.6382.96135forward
CNT30103844Citrullus lanatusOryza rufipogon16.1627.3784.11107forward
CNT30578254Citrullus lanatusOryza barthii14.3534.0584.2195forward
CNT30174517Citrullus lanatusVigna angularis20.8568.6680.43138forward
CNT30333509Citrullus lanatusCynara cardunculus18.1321.8285120forward
CNT30726406Citrullus lanatusLupinus angustifolius19.4930.7984.5129forward

Expression of CNT3021397

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKTMKKDTRLFTGSIIFPFLLFINIFGPDFLVVLL*

>peptide 2 (43 aa)
ALEYDCEYHQLVKIRERATIPSNINGSKGTPPWKHLYRNLSSL*

Sequence

>CNT3021397
GGCCTTGGAATATGATTGTGAATATCATCAATTGGTGAAAATCCGAGAAAGAGCTACAATTCCTTCCAACATCAACGGTTCAAAGGGGACTCCTCCTTGG
AAACATCTTTACAGAAACCTCAGCTCCTTATGATAAAATTTGCAAGTAGTTCTGAACACCGTAAATTTTGAAATCAATAGAATGGCAGACCCAGAATCAT
ACAAAAACAGAAACCACACCTTCAAGATTACCATGTATGAAACATTGCACAACTTGACTTAATAAGAAACAAACATGAAAACGATGAAAAAAGATACGCG
ATTATTCACGGGATCAATAATCTTCCCCTTCCTCCTCTTCATCAACATCTTCGGCCCCGACTTCCTCGTAGTCCTTCTCTAGAGCAGCAAGATCCTCACG
GGCTTCAGAGAATTCGCCTTCCTCCATGCCCTCCCCCACGTACCAATGGACAAATGCGCGCTTAGCATACATAAGATCGAATTTGTGGAGATGACTTGGG
ATATCAAGCGGTTCAAGTTGGTGTAAGTTGGTCTTTCAATATCCAACGATCTCCTACAGATATCATAAATGGCTTCATTGTCCAGAAGAACAGCGACATC
TGTGTGTTCTAGCAGAGAATGAGTGGAAAGCACACTGTTGTAGGGTTCTACCACAGCAGTAG