Detailed information on CNT30361568


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677660Sorghum bicolorSetaria viridis38.6459.7394.01267forward
CNT3021397Sorghum bicolorCitrullus lanatus22.8723.8780.38158forward
CNT3016707Sorghum bicolorZea mays62.0871.595.1429forward
CNT30344814Sorghum bicolorEragrostis tef31.454.5287.56217forward
CNT30358630Sorghum bicolorLactuca sativa38.0667.0981.37263forward
CNT30333509Sorghum bicolorCynara cardunculus28.0835.2782.47194forward

Expression of CNT30361568

Peptides detected in this lncRNA

>peptide 1 (40 aa)
PSSPPRTGLRPATSSSPALRPPPSPPNSVVSRLRERKVDD*

>peptide 2 (39 aa)
PLQSSTNRAPAGYLLVSGSPPSSIAPQLGRLASPREKGR*

>peptide 3 (81 aa)
MNECTLRIHEIKFAVNTGKDLSHSCVVADHADCSLHLGQVPSRDYSWWLVVYPALEASRAPCSCLPIFLSDQGKDLLLLFQL

>peptide 4 (41 aa)
MRSNLRSIREKTSATAVLLLIMQTARCTLARSPPGTTVGGW*

>peptide 5 (38 aa)
SPPVLHEPGSGRLPPRLRLSALLHRPPTRSSRVSERER*

Sequence

>CNT30361568
TCCCCTCCAGTCCTCCACGAACCGGGCTCCGGCCGGCTACCTCCTCGTCTCCGGCTCTCCGCCCTCCTCCATCGCCCCCCAACTCGGTCGTCTCGCGTCT
CCGAGAGAGAAAGGTAGATGACTGATGCCGTCGGAGAATGAGGGGTGATCTGCGCTGAATCGACAGTTCGGCATGCTCGTCGCCGCCGCCTCCGTTCACT
AGCAGGTGTAATGCAATAGCAAACAGGGAAACAAATGGGAGGTACAACCATGCAACCCAAGCACTCCTGGTTGACTGATACCAAAGGAAAATAACCATGC
ATCCAGATGGGATGACTCAATACTCAGCTTCCTCATCATCATCTTCAACTTCAGCTCCGACTTCCTCATAATCCTTCTCCAGTGCCGCAAGATCCTCCCT
TGCCTCTGAGAACTCCCCTTCTTCCATCCCTTCACCGACATACCAATGAACGAATGCACGCTTCGCATACATGAGATCAAATTTGCGGTCAATACGGGAA
AAGACCTCAGCCACAGCTGTGTTGTTGCTGATCATGCAGACTGCTCGTTGCACCTTGGCCAGGTCCCCTCCAGGGACTACAGTTGGTGGTTGGTAGTTTA
TCCCGCACTTGAAGCCAGTAGGGCACCTTGCAGTTGTCTGCCAATTTTCTTATCCGATCAAGGCAAAGATCTACTACTTCTCTTCCAACTG