Detailed information on CNT30570286


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677492Vitis viniferaSetaria viridis36.3828.0685.47179forward
CNT30521842Vitis viniferaSetaria italica36.1819.2885.39178forward
CNT30517711Vitis viniferaJuglans regia44.3141.1388.07218forward
CNT30702815Vitis viniferaQuercus lobata27.2436.4191.79134forward
CNT3021397Vitis viniferaCitrullus lanatus25.6119.0387.3126forward
CNT3059767Vitis viniferaArabidopsis lyrata35.9824.9688.7177forward
CNT30265527Vitis viniferaBrassica rapa36.3829.0688.83179forward
CNT3041114Vitis viniferaChlamydomonas reinhardtii24.1916.9385.71119forward
CNT30204030Vitis viniferaHelianthus annuus31.337.1190.26154forward
CNT30721298Vitis viniferaTriticum spelta22.9734.7784.96113forward
CNT30340361Vitis viniferaEragrostis tef21.7520.4684.11107forward
CNT30358630Vitis viniferaLactuca sativa32.3240.5685.53159forward
CNT30481833Vitis viniferaChara braunii26.6344.4183.21131forward
CNT30430260Vitis viniferaPapaver somniferum40.2434.0288.89198forward
CNT30333509Vitis viniferaCynara cardunculus30.8927.6486.18152forward
CNT3050225Vitis viniferaCucumis sativus16.4621.0492.5981forward

Expression of CNT30570286

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MRENTSATLVELVIDATFESSRAPINKLNSALSLDSGNSCIHILRNNITSVHQAAGHVLAM

>peptide 2 (30 aa)
IGSNIKDNSTLMIGRTYQTMSSAEEIDIAK*

>peptide 3 (29 aa)
MHEGTLGIHKIKLVVNAGEHFCHTGRVGN*

Sequence

>CNT30570286
ATAGGCTCAAACATAAAAGATAATAGCACACTGATGATAGGAAGAACCTACCAAACAATGTCGAGTGCAGAAGAAATAGACATAGCAAAATAAAACATAA
GGTTCCAATCACACATAAAAGCCCACTTAGTACTCGTCTCCCTCATCATCGTCCCCCTCAGCTGATTCAGCACCCACCTCCTCATAATCCTTCTCAAGTG
CAGCAAGATCCTCACGAGCTTCTGAGAATTCTCCTTCCTCCATACCCTCACCCACGTACCAATGCACGAAGGCACGCTTGGCATACATAAGATCAAACTT
GTGGTCAATGCGGGAGAACACTTCTGCCACACTGGTAGAGTTGGTAATTGATGCCACATTTGAATCCAGTAGGGCACCAATCAACAAACTGAATAGTGCG
CTTAGTCTTGATAGTGGCAACAGCTGCATTCACATCCTTAGGAACAACATCACCTCGGTACATCAGGCAGCAGGCCATGTACTTGCCATGAC