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Detailed information on CNT3022486


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 2e-28

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522342Populus trichocarpaSetaria italica2526.5387.18156forward
CNT30618174Populus trichocarpaSesamum indicum22.4432.4188.57140forward
CNT3021397Populus trichocarpaCitrullus lanatus21.6320.3982.96135forward
CNT3071007Populus trichocarpaQuercus suber19.7124.0790.24123forward
CNT30504800Populus trichocarpaNicotiana attenuata37.3452.7187.98233forward
CNT3059767Populus trichocarpaArabidopsis lyrata37.8233.2986.44236forward
CNT3016707Populus trichocarpaZea mays252686.54156forward
CNT30219368Populus trichocarpaKalanchoe fedtschenkoi22.1223.6385.51138forward
CNT30358630Populus trichocarpaLactuca sativa37.8260.282.63236forward
CNT30482824Populus trichocarpaChara braunii29.6524.3183.24185forward
CNT30430260Populus trichocarpaPapaver somniferum40.8743.8187.84255forward
CNT30333509Populus trichocarpaCynara cardunculus25.3228.7383.54158forward

Expression of CNT3022486

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MVCLLCGDDRGIRGKHEMDPGVWNQVGLELSNIHIKSSIKP*

>peptide 2 (40 aa)
REVKLPPHYTQVPSALVIFYETKYEKCTTTVIAARRNREN*

>peptide 3 (35 aa)
MKWILGYGTKLVWNSVTSTLRAPSNLNEAVKDEIT*

Sequence

>CNT3022486
CGAGAAGTGAAGCTGCCTCCACATTACACCCAAGTCCCAAGCGCACTCGTAATATTCTATGAAACCAAGTATGAGAAATGCACAACTACTGTAATAGCAG
CAAGAAGGAATAGAGAAAATTAACAATAGGGCTCCAATCCTTGTATTTTTTTTATTACAATACCAAAGATCACACGTACCAACAGACATGTACTCATCTC
CTTCATCACCATCCTCTCCATCGGGAGATTCAGCCCCAACCTCCTCATAATCCTTCTCCAGGGCAGCAAGATCCTCACGAGCCTCTGAGAACTCTCCTTC
CTCCATACCCTCGCCAACATACCAGTGCACAAACGCACGCTTGGCATACATGAGATCAAACTTGTGGTCAATGCGAGAGAAGACTTCTGCAACACTTGTG
GAATTGGAAATCATGCAAACAGCCCTCTGAACCTTAGCAAGGTCGCCTCCTGGAACAACAGTTGCTGCTCATGGTATGCCTTCTCTGCGGAGATGACAGG
GGCATAAGAGGAAAGCATGAAATGGATCCTGGGGTATGGAACCAAGTTGGTTTGGAACTCAGTAACATCCACATTAAGAGCTCCATCAAACCTTAATGAG
GCAGTCAAAGATGAGATCACCTGA