CANTATAdb - search

Detailed information on CNT30522342

BLAST search results

BLAST vs Swiss-Prot:
sp|O22348|TBA2_ELEIN, E-value = 2e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30677660	Setaria italica	Setaria viridis	46.09	60.63	99.26	271	forward
CNT30372454	Setaria italica	Arabidopsis thaliana	44.73	55.02	82.51	263	forward
CNT3021397	Setaria italica	Citrullus lanatus	20.24	17.98	81.51	119	forward
CNT30504800	Setaria italica	Nicotiana attenuata	27.72	36.88	83.44	163	forward
CNT3059767	Setaria italica	Arabidopsis lyrata	30.44	25.25	86.59	179	forward
CNT30446069	Setaria italica	Saccharum spontaneum	86.39	22.4	90.94	508	forward
CNT3016707	Setaria italica	Zea mays	55.61	54.5	94.5	327	forward
CNT30344814	Setaria italica	Eragrostis tef	23.13	34.17	89.71	136	forward
CNT30361871	Setaria italica	Sorghum bicolor	73.47	25.31	92.13	432	forward
CNT30358630	Setaria italica	Lactuca sativa	42.18	63.27	83.06	248	forward
CNT3022486	Setaria italica	Populus trichocarpa	26.53	25	87.18	156	forward
CNT30333509	Setaria italica	Cynara cardunculus	39.63	42.36	81.97	233	forward

Expression of CNT30522342

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MKPSYQFNQLYTFTLPTMNSCNAITNRERNGRTTMPSKHS*

>peptide 2 (41 aa)
MRSNLRSIREKTSATAVLLLIMQTARCTLARSPPGTTVGGW*

>peptide 3 (62 aa)
MNKCTLCIHEIKLAVNTGEDLSHGCVVADHADCSLHLGQVPSWDYSWWLVVYPALEASRTPVH

Sequence

>CNT30522342
CTGCCTCCTACCCACGCAGTCCCAGCTCTCATTGATAGAAGTTGGACCAAACTAATAACTAAATACTTATTACAGATATAGATTTTATTTTATATGAAGC
CATCGTACCAGTTCAACCAACTTTACACTTTTACTCTGCCAACCATGAACAGTTGCAATGCAATAACAAACAGGGAAAGAAATGGCAGGACAACAATGCC
ATCCAAGCACTCTTAGTCTTAGTTGACTGATACCTAAGGAAAATAAGCATGCTTCCAGATGAGATGACTCAATATTCAGCTTCGTCCTCATCGTCTTCAA
CTTCAGCTCCAACTTCCTCATAATCCTTCTCCAGTGCTGCAAGATCCTCCCTTGCCTCTGAGAACTCACCTTCTTCCATCCCTTCACCGACATACCAATG
AACAAATGCACGCTTTGCATACATGAGATCAAACTTGCGGTCAATACGGGAGAAGACCTCAGCCACGGCTGTGTTGTTGCTGATCATGCAGACTGCTCGT
TGCACCTTGGCCAGGTCCCCTCCTGGGACTACAGTTGGTGGTTGGTAGTTTATCCCGCACTTGAAGCCAGTAGGACACCTGTACATGT