Detailed information on CNT30481833


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678663Chara brauniiSetaria viridis47.1225.8486.33139forward
CNT30517711Chara brauniiJuglans regia41.3623.0283.61122forward
CNT30371538Chara brauniiArabidopsis thaliana43.3926.9582.03128forward
CNT30144939Chara brauniiMedicago truncatula42.3725.6783.2125forward
CNT3059767Chara brauniiArabidopsis lyrata43.3918.0581.25128forward
CNT3041114Chara brauniiChlamydomonas reinhardtii49.1520.6382.76145forward
CNT30229012Chara brauniiAnanas comosus47.1216.7785.61139forward
CNT30219368Chara brauniiKalanchoe fedtschenkoi42.7121.5881.75126forward
CNT30340361Chara brauniiEragrostis tef31.1917.5988.0492forward
CNT30358630Chara brauniiLactuca sativa44.4133.4280.92131forward
CNT30570286Chara brauniiVitis vinifera44.4126.6383.21131forward
CNT30333509Chara brauniiCynara cardunculus44.4123.8285.5131forward

Expression of CNT30481833

Peptides detected in this lncRNA

>peptide 1 (96 aa)
PLLISFTQSHTNLPLIQLLPSTSTLLHRQRPHPRSRRLPLRNPSREPPGLHGPPRILPPPSPRPHTNEQTLASHTSDRTCGRRRQREGHAFPRRFR*

>peptide 2 (97 aa)
LSSFLSPNRIQTFLLSSSCLALVLFFIANDRIHGVGAYLFVILLESRQVFTGLREFSLLHPLAHIPMNKRSLRIHQIELVVDEDSARDMLSRAGFAEK

Sequence

>CNT30481833
CCTCTCCTCATTTCTTTCACCCAATCGCATACAAACCTTCCTCTTATCCAGCTCCTGCCTAGCACTAGTACTCTTCTTCATCGCCAACGACCGCATCCAC
GGAGTCGGCGCCTACCTCTTCGTAATCCTTCTCGAGAGCCGCCAGGTCTTCACGGGCCTCCGAGAATTCTCCCTCCTCCATCCCCTCGCCCACATACCAA
TGAACAAACGCTCGCTTCGCATACATCAGATCGAACTTGTGGTCGACGAAGACAGCGCGAGGGACATGCTTTCCCGCGCCGGTTTCGCTGAAAAA