Detailed information on CNT30613544


BLAST search results

BLAST vs Swiss-Prot:
sp|P34790|CP18C_ARATH, E-value = 4e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376622Arabis alpinaArabidopsis thaliana47.9134.4679.64275forward
CNT3071632Arabis alpinaQuercus suber27.1814.781.41156forward
CNT30507180Arabis alpinaNicotiana attenuata22.6519.1786.15130forward
CNT30145071Arabis alpinaMedicago truncatula21.7826.8880.8125forward
CNT30312502Arabis alpinaCamelina sativa43.7370.981.67251forward
CNT3075586Arabis alpinaBrassica juncea29.0931.5782.04167forward
CNT30429993Arabis alpinaPapaver somniferum50.8728.9782.19292forward
CNT3023052Arabis alpinaPopulus trichocarpa19.1624.2381.82110forward

Expression of CNT30613544

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MFPLEILVLKFRTVNRFTTCTITSSEITSLTHEIRNHTMKRRSFEV*

Sequence

>CNT30613544
GATAGATTATGATAAGATTCTTCTCTCTCTCGAGAGAGAAATCTAAGAAAGCTGACCACAATCAGCAACAACAACAGGCTTAGCAGCCTTAACAACATCT
AAACCTTCAACAACTTGACCAAACACAACATGTTTACCATCAAGCCAATCAGTTTTCACAGTACATATAAAAAACTGAGATCCATTAGTATTAGGACCAG
CGTTAGCCATGGATAAAATCCCAGGAGCTGTATGTTTCCTCTCGAAATTCTCGTCCTTAAATTTCGCACCGTAAATCGATTCACCACCTGTACCATTACC
AGCAGTGAAATCACCTCCTTGACACATGAAATTCGGAATCACACGATGAAACGCAGATCCTTTGAAGTGTAGTGGCTTTCCGCTACGTCCGAGTCCTTTC
TCACCTGTACAAAGAGCTCTGAAATTCTCTGCTGTCTCTGGTGTCTTATCGGTGTACAACTCCATCACGATACGTCCAGCTTGTGCACCATCGATGGTCA
TGTCGAAGAAGACCTTAGGAAACGCCATTGTTGTTTAGAGAAGAGAGTTTTTTTGTTTGGATCTGAGTTTTTTT