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Detailed information on CNT30550306


BLAST search results

BLAST vs Swiss-Prot:
sp|P22954|HS702_ARATH, E-value = 2e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672427Oryza brachyanthaSetaria viridis20.7437.583.3384forward
CNT30522780Oryza brachyanthaSetaria italica38.7718.5889.81157forward
CNT30535611Oryza brachyanthaEucalyptus grandis20.743.3491.6784forward
CNT30381739Oryza brachyanthaManihot esculenta21.7312.0989.7788forward
CNT30283475Oryza brachyanthaTriticum aestivum39.5120.4388.75160forward
CNT30394412Oryza brachyanthaTriticum turgidum39.7518.8384.47161forward
CNT30510806Oryza brachyanthaSolanum lycopersicum15.3121.4587.162forward
CNT30451043Oryza brachyanthaSaccharum spontaneum39.0118.5483.54158forward
CNT30367262Oryza brachyanthaSorghum bicolor39.0125.2484.81158forward
CNT30595552Oryza brachyanthaOryza meridionalis25.9346.4694.29105forward
CNT30369874Oryza brachyanthaOryza glumipatula28.6426.1382.76116forward
CNT30578076Oryza brachyanthaOryza barthii39.7520.0285.71161forward
CNT30496988Oryza brachyanthaDigitaria exilis25.6810.8891.35104forward

Expression of CNT30550306

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MAIQTSKSCEHRSHTTLNPTTSPGLKLPHSLRAGITIGPPPA*

>peptide 2 (48 aa)
YGRKLKLNYFQGNQKGTTQERFIVESRNLTISGQVQVTPYGNTDFQKL*

>peptide 3 (32 aa)
MPVAPPMSGPAPWYIFAMMGLQMLSSSFILSSN

Sequence

>CNT30550306
TTTACGGTCGAAAGTTGAAACTTAACTATTTTCAGGGCAACCAAAAAGGAACGACACAAGAGAGATTTATAGTCGAAAGTCGAAACTTAACTATTTCAGG
GCAAGTTCAGGTAACACCATATGGCAATACAGACTTCCAAAAGTTGTGAGCACAGATCTCACACGACACTGAACCCAACAACATCACCCGGGTTAAAACT
TCCACACTCCCTGCGTGCCGGAATCACCATCGGACCACCGCCAGCTTAATCGACCTCCTCGATCTTGGGTCCTGCACCGCTGCCACCGGCCGGCACGTCC
TCGTCCATGCCAGTGGCGCCGCCCATGTCCGGGCCGGCGCCCTGGTACATCTTCGCGATGATGGGGTTGCAGATGCTCTCGAGCTCCTTCATCTTGTCCT
CAAAC