Detailed information on CNT30223130


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672564Hordeum vulgareSetaria viridis48.4122.7288.52122forward
CNT30283475Hordeum vulgareTriticum aestivum44.8414.4387.61113forward
CNT30392820Hordeum vulgareTriticum turgidum45.2414.9498.25114forward
CNT30562094Hordeum vulgareActinidia chinensis22.2210.7591.0756forward
CNT30440568Hordeum vulgareAegilops tauschii37.728.0291.5895forward
CNT30614007Hordeum vulgareArabis alpina45.6319.0182.61115forward
CNT30231843Hordeum vulgareAnanas comosus42.4645.7390.65107forward
CNT30683744Hordeum vulgareTriticum urartu47.6226.9197.5120forward

Expression of CNT30223130

Peptides detected in this lncRNA

>peptide 1 (83 aa)
DAPGSRWDPGELKLAEQVVVLGPRPLALIHLDEHAGLVVRVGRAEVDADRRPVSFSGHDLVYNSSGKTTSKGIAGLVGSWIGAR

>peptide 2 (31 aa)
RPWEPVGSRRAQTCRAGCCPWSSPSRPHTPG*

>peptide 3 (40 aa)
TPLGAGGIPESSNLPSRLLSLVLALSPSYTWMSTPGWLSE*

>peptide 4 (36 aa)
MPIAGPSPFPAMISSTTQAEKQPRRELRDWLDLGSEH

Sequence

>CNT30223130
GACGCCCCTGGGAGCCGGTGGGATCCCGGAGAGCTCAAACTTGCCGAGCAGGTTGTTGTCCTTGGTCCTCGCCCTCTCGCCCTCATACACCTGGATGAGC
ACGCCGGGCTGGTTGTCAGAGTAGGTCGTGCCGAGGTCGATGCCGATCGCCGGCCCGTCTCCTTTTCCGGCCATGATCTCGTCTACAACTCAAGCGGAAA
AACAACCTCGAAGGGAATTGCGGGATTGGTTGGATCTTGGATCGGAGCACGC