Detailed information on CNT30672564


BLAST search results

BLAST vs Swiss-Prot:
sp|P29357|HSP7E_SPIOL, E-value = 4e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521211Setaria viridisSetaria italica30.5459.8598.17164forward
CNT30381739Setaria viridisManihot esculenta46.5534.3482250forward
CNT30283475Setaria viridisTriticum aestivum52.5136.0290.78282forward
CNT30223130Setaria viridisHordeum vulgare22.7248.4188.52122forward
CNT30510893Setaria viridisSolanum lycopersicum14.3437.5689.6177forward
CNT305922Setaria viridisZea mays15.8323.1698.8285forward
CNT30625375Setaria viridisDaucus carota14.934.4886.2580forward
CNT30621132Setaria viridisCajanus cajan27.5625.385.14148forward
CNT30151237Setaria viridisBrachypodium distachyon31.2831.791.07168forward
CNT30582481Setaria viridisEchinochloa crusgalli17.6920.3998.9595forward
CNT30112153Setaria viridisFicus carica51.0230.4484.67274forward

Expression of CNT30672564

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MPIAGPSPFPAISSSHYRRSRSCSGFARDRRVGKMGRGVVAAAGGGLGFRE

>peptide 2 (46 aa)
HLGDDGVAQALQLLHLVLELVRLGELVGVVLQRVLGLHLLLVLLVL*

>peptide 3 (51 aa)
MVILFFWPVVLSSAETFRMPLASNLPRRLLSRVLVLSPSYTWISTPGWLSE*

Sequence

>CNT30672564
ACATCTTGGCGATGATGGGGTTGCACAGGCTCTCCAGCTCCTTCATCTTGTCCTCGAACTCGTCCGCCTCGGCGAGCTGGTTGGCGTAGTTCTCCAGAGA
GTTCTTGGACTCCACCTTCTTCTTGTGCTCCTCGTCCTCTGACTTGTACTTCTCAGCGTCCTGCACCATCTTCTCGATCTCCTCCTTGGACAGACGGCCC
TTATCGTTGGTGATGGTGATCTTGTTCTTCTGGCCCGTGGTCTTGTCCTCAGCGGAGACGTTCAGGATGCCGTTGGCCTCGAACTTGCCCAGGAGGTTGT
TGTCGCGGGTCCTAGTCCTCTCACCCTCGTACACCTGGATCAGCACACCAGGCTGGTTGTCCGAGTAGGTGGTGCCGAGGTCGATGCCGATCGCCGGCCC
GTCGCCCTTCCCCGCCATCTCTTCTTCTCACTACCGGCGGTCGCGGAGCTGCAGCGGCTTTGCGAGGGACCGGAGGGTGGGGAAGATGGGACGCGGAGTT
GTGGCGGCGGCGGGTGGAGGACTAGGGTTTCGAGAGG