« Back to Zea mays search


Detailed information on CNT301752


BLAST search results

BLAST vs Swiss-Prot:
sp|O65719|HSP7C_ARATH, E-value = 6e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697157Zea maysOryza sativa42.1549.5587.27110forward
CNT30520761Zea maysSetaria italica42.5343.0287.39111forward
CNT30640495Zea maysNymphaea colorata81.2352.3584.43212forward
CNT30535611Zea maysEucalyptus grandis82.388.5590.23215forward
CNT30491218Zea maysOlea europaea27.210.387.3271forward
CNT30224773Zea maysHordeum vulgare42.9145.7188.39112forward
CNT30395728Zea maysTriticum turgidum52.1130.3691.18136forward
CNT30569551Zea maysActinidia chinensis74.7119.3586.15195forward
CNT30552909Zea maysOryza glaberrima40.2338.1883.81105forward
CNT30172487Zea maysTrifolium pratense81.9966.4682.24214forward
CNT30440625Zea maysAegilops tauschii51.7248.0490.37135forward
CNT30665093Zea maysTriticum dicoccoides75.162.2291.33196forward
CNT3079894Zea maysBrassica juncea81.9976.781.78214forward
CNT30447372Zea maysSaccharum spontaneum96.5579.2594.05252forward
CNT30143339Zea maysLolium perenne64.3744.6889.29168forward
CNT30625786Zea maysDaucus carota22.616.9188.1459forward
CNT30685689Zea maysTriticum urartu31.4231.7892.6882forward
CNT30479018Zea maysArabidopsis halleri72.0358.279.26188forward
CNT30361391Zea maysSorghum bicolor90.828.3295.36237forward
CNT30369767Zea maysOryza glumipatula52.1152.9288.24136forward
CNT3024414Zea maysPopulus trichocarpa80.0868.5281.82209forward
CNT30578215Zea maysOryza barthii42.9115.6486.61112forward
CNT30115466Zea maysOryza nivara36.0233.9494.6894forward
CNT30112113Zea maysFicus carica17.6221.397.8346forward

Expression of CNT301752

Peptides detected in this lncRNA

>peptide 1 (85 aa)
EDGVDGVHGDLVLGGVADEPLRIGERDIRRRCTVALVVGDDLDSVMLPHPDARVGRTEVDADRRPVSFSGHGDALVESIVKKGENT

Sequence

>CNT301752
CGAAGACGGTGTTGATGGGGTTCATGGCGACCTGGTTCTTGGCGGCGTCGCCGACGAGCCTCTCCGAATCGGTGAACGCGACATAAGACGGCGTTGTACG
GTTGCCCTGGTCGTTGGCGATGATCTCGACTCGGTCATGCTGCCACACCCCGACGCACGAGTAGGTCGTACCGAGGTCGATGCCGATCGCCGGCCCGTCT
CCTTTTCCGGCCATGGAGACGCTCTCGTCGAGAGTATCGTGAAGAAGGGGGAAAATACCTC