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Detailed information on CNT30172487


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697157Trifolium pratenseOryza sativa23.9134.6887.0177forward
CNT30521211Trifolium pratenseSetaria italica28.5733.5888.0492forward
CNT30640495Trifolium pratenseNymphaea colorata64.2951.1187.44207forward
CNT30535611Trifolium pratenseEucalyptus grandis66.468.5183.18214forward
CNT30404377Trifolium pratenseBeta vulgaris42.5534.9582.48137forward
CNT30224773Trifolium pratenseHordeum vulgare27.0235.5188.5187forward
CNT30395728Trifolium pratenseTriticum turgidum30.1221.6587.6397forward
CNT30569551Trifolium pratenseActinidia chinensis60.5619.3583.08195forward
CNT30552909Trifolium pratenseOryza glaberrima17.3920.3689.2956forward
CNT30440625Trifolium pratenseAegilops tauschii39.7545.5582.81128forward
CNT30665093Trifolium pratenseTriticum dicoccoides58.0759.3784.49187forward
CNT3079894Trifolium pratenseBrassica juncea60.8770.2585.71196forward
CNT30447372Trifolium pratenseSaccharum spontaneum64.9165.7282.78209forward
CNT30143339Trifolium pratenseLolium perenne51.5544.1584.94166forward
CNT301752Trifolium pratenseZea mays66.4681.9982.24214forward
CNT30685689Trifolium pratenseTriticum urartu30.1237.688.6697forward
CNT30479018Trifolium pratenseArabidopsis halleri63.6663.4785.85205forward
CNT30361391Trifolium pratenseSorghum bicolor64.9124.9784.21209forward
CNT30369767Trifolium pratenseOryza glumipatula38.5148.2583.06124forward
CNT3024414Trifolium pratensePopulus trichocarpa66.1569.8485.45213forward
CNT30578215Trifolium pratenseOryza barthii23.9110.7585.7177forward
CNT30115466Trifolium pratenseOryza nivara30.1235.0289.6997forward
CNT30112113Trifolium pratenseFicus carica20.530.5687.8866forward

Expression of CNT30172487

Peptides detected in this lncRNA

>peptide 1 (71 aa)
ENGVDRVHGDLILGGITDKTLGVGKGDIRRRGSVTLIVSDDFNTVMLPYTDTRVGGSEIDSDSWSFSFSGH*

Sequence

>CNT30172487
CGAAAACGGTGTTGATAGGGTTCATGGCGACTTGATTCTTGGCGGCATCACCGATAAGACGCTCGGAGTCGGTAAAGGCGACATACGACGGCGTGGTTCT
GTTACCTTGATCGTTAGCGATGATTTCAACACGGTCATGTTGCCATACACCGACACAAGAGTAGGTGGTTCCGAGATCGATTCCGATAGCTGGTCCTTCT
CCTTTTCCGGCCATTGAATTTCACTCTTTCTGGTTCGTTGCGAAAAAAGAGAGAAAGATCTGAGAGGAAGAGAATGAAAATCGCAGTTATAATAACACTG
CGATTTCAAGAGTGAGTAAAAG