Detailed information on CNT30552909


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697157Oryza glaberrimaOryza sativa51.2763.5190.07141forward
CNT30520761Oryza glaberrimaSetaria italica37.4539.9293.2103forward
CNT30640495Oryza glaberrimaNymphaea colorata38.1825.9388.57105forward
CNT30535611Oryza glaberrimaEucalyptus grandis38.184.1894.29105forward
CNT30295130Oryza glaberrimaTriticum aestivum36.739.0687.13101reverse complement
CNT30224773Oryza glaberrimaHordeum vulgare57.0964.0885.35157forward
CNT30395728Oryza glaberrimaTriticum turgidum37.0922.7788.24102forward
CNT30568742Oryza glaberrimaActinidia chinensis19.2724.5492.4553forward
CNT30172487Oryza glaberrimaTrifolium pratense20.3617.3989.2956forward
CNT30665093Oryza glaberrimaTriticum dicoccoides38.1833.3391.43105forward
CNT30449535Oryza glaberrimaSaccharum spontaneum38.1825.4990.48105forward
CNT30143339Oryza glaberrimaLolium perenne38.1827.9390.48105forward
CNT301752Oryza glaberrimaZea mays38.1840.2383.81105forward
CNT30625786Oryza glaberrimaDaucus carota23.647.6189.2365forward
CNT30685689Oryza glaberrimaTriticum urartu57.0960.8582.17157forward
CNT30367474Oryza glaberrimaSorghum bicolor38.1836.9792.38105forward
CNT30369751Oryza glaberrimaOryza glumipatula51.2757.7990.07141forward
CNT3024414Oryza glaberrimaPopulus trichocarpa2421.6487.8866forward
CNT30578215Oryza glaberrimaOryza barthii50.9119.5590140forward
CNT30116284Oryza glaberrimaOryza nivara70.5572.1290.72194forward
CNT30112113Oryza glaberrimaFicus carica20.7326.3992.9857forward

Expression of CNT30552909

Peptides detected in this lncRNA

>peptide 1 (74 aa)
VDGVHGDLVLGGIPDEALGVREPDVGGGGAVPLVVPRSMPIAGPSPLVGAMAPPARGSRRRREERVNEERERGG*

Sequence

>CNT30552909
GTTGATGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCCCCGATGAGGCGCTCGGTGTCCGTGAACCCGACGTAGGAGGGGGTGGTGCGGTTCCCCTGG
TCGTTCCGAGGTCGATGCCGATCGCTGGCCCCTCCCCCTTGGTCGGCGCCATGGCTCCTCCCGCTCGCGGGTCGCGGCGGCGGCGCGAGGAACGAGTGAA
CGAGGAGAGAGAGAGAGGAGGCTAGGGTTTCCGCGGATGCGGGAGGAGGAGTGGAGGAGAGGAGGCGAGTGCGGC