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Detailed information on CNT3024414


BLAST search results

BLAST vs Swiss-Prot:
sp|O65719|HSP7C_ARATH, E-value = 9e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697157Populus trichocarpaOryza sativa16.3922.529450forward
CNT30521211Populus trichocarpaSetaria italica18.6920.891.2357forward
CNT30640495Populus trichocarpaNymphaea colorata68.251.3685.58208forward
CNT30535611Populus trichocarpaEucalyptus grandis68.528.3182.3209forward
CNT30404377Populus trichocarpaBeta vulgaris45.935.7181.43140forward
CNT30165777Populus trichocarpaPistacia vera64.9268.7582.32198forward
CNT30568742Populus trichocarpaActinidia chinensis34.148.1588.46104forward
CNT30552909Populus trichocarpaOryza glaberrima21.642487.8866forward
CNT30172487Populus trichocarpaTrifolium pratense69.8466.1585.45213forward
CNT30665093Populus trichocarpaTriticum dicoccoides61.6459.6881.38188forward
CNT3079894Populus trichocarpaBrassica juncea63.9369.8984.1195forward
CNT30447372Populus trichocarpaSaccharum spontaneum68.5265.7281.34209forward
CNT30143339Populus trichocarpaLolium perenne52.7942.8281.99161forward
CNT301752Populus trichocarpaZea mays68.5280.0881.82209forward
CNT30479018Populus trichocarpaArabidopsis halleri61.6458.284.57188forward
CNT30361391Populus trichocarpaSorghum bicolor68.5224.9782.3209forward
CNT30369751Populus trichocarpaOryza glumipatula16.3920.499450forward
CNT30704002Populus trichocarpaPrunus avium38.0355.7781.03116forward
CNT30115466Populus trichocarpaOryza nivara28.231.0586.0586forward
CNT30112113Populus trichocarpaFicus carica21.3130.0987.6965forward

Expression of CNT3024414

Peptides detected in this lncRNA

>peptide 1 (56 aa)
RILTKNGVDWVHGDLVLSSIADQTLGVSESNIRRCRSVALIVGYDFHSIMLPHTDA*

Sequence

>CNT3024414
AGAATACTAACCAAAAACGGTGTTGATTGGGTTCATGGCGACCTGGTTCTTAGCAGCATCGCCGATCAAACGCTCGGTGTCAGTGAAAGCAACATAAGAC
GGTGTCGTTCTGTTGCCTTGATCGTTGGCTATGATTTCCACTCTATCATGTTGCCACACACCGACGCATGAGTAGGTGGTGCCTAGATCAATACCGATAG
CCGGTCCTTCTCCTTTTCCGGCCATTATGATTAGATCTAATGGTAAAGCGGCTAAGAAATTAGAATGAAAAGATTAGGGCTTGTGTAACAAGAGATATTT
AAAGT