Detailed information on CNT30685689


BLAST search results

BLAST vs Swiss-Prot:
sp|O65719|HSP7C_ARATH, E-value = 3e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697157Triticum urartuOryza sativa36.8242.7991.5895forward
CNT30521211Triticum urartuSetaria italica54.6551.4695.04141forward
CNT30640495Triticum urartuNymphaea colorata31.0119.7592.580forward
CNT30535611Triticum urartuEucalyptus grandis39.154.0295.05101forward
CNT30295130Triticum urartuTriticum aestivum39.159.0691.09101reverse complement
CNT30224773Triticum urartuHordeum vulgare95.74100.8291.5247forward
CNT30394412Triticum urartuTriticum turgidum63.1819.0695.09163forward
CNT30568742Triticum urartuActinidia chinensis20.5424.5492.4553forward
CNT30552909Triticum urartuOryza glaberrima60.8557.0982.17157forward
CNT30172487Triticum urartuTrifolium pratense37.630.1288.6697forward
CNT30440625Triticum urartuAegilops tauschii56.5951.9697.26146forward
CNT30665093Triticum urartuTriticum dicoccoides58.5347.94100151forward
CNT3079894Triticum urartuBrassica juncea37.2134.4184.3896forward
CNT30449535Triticum urartuSaccharum spontaneum41.4725.9796.26107forward
CNT30143339Triticum urartuLolium perenne39.1526.8694.06101forward
CNT301752Triticum urartuZea mays31.7831.4292.6882forward
CNT30479018Triticum urartuArabidopsis halleri31.0124.7783.7580forward
CNT30367474Triticum urartuSorghum bicolor37.634.1596.9197forward
CNT30369751Triticum urartuOryza glumipatula38.3740.5791.9299forward
CNT30578215Triticum urartuOryza barthii37.613.5590.7297forward
CNT30115466Triticum urartuOryza nivara52.3348.7493.33135forward
CNT30112113Triticum urartuFicus carica21.7125.9394.6456forward

Expression of CNT30685689

Peptides detected in this lncRNA

>peptide 1 (62 aa)
CSPKTVLMGFMATWFLAASPMRRSESVKATYEGVVPRSMPMAGPSPLVGAMALARSRRRKLS*

>peptide 2 (54 aa)
VLTEDGVDGVHGDLVLGGIADEALRVGEGDVRGRGAEVDADGRPLALGRRHGSS*

Sequence

>CNT30685689
GTGCTCACCGAAGACGGTGTTGATGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCGCCGATGAGGCGCTCCGAGTCGGTGAAGGCGACGTACGAGGGC
GTGGTGCCGAGGTCGATGCCGATGGCCGGCCCCTCGCCCTTGGTCGGCGCCATGGCTCTAGCTAGATCGAGAAGAAGGAAGCTAAGCTAGGACTAGGGTT
AGGGTTTGAGGAGCCTTTGCGCAGCTGCTGGCGGCGGCTGCTGCGGACTCGGGAGAGG