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Detailed information on CNT30395728


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697157Triticum turgidumOryza sativa24.1148.6589.81108forward
CNT30520761Triticum turgidumSetaria italica24.5542.6492.73110forward
CNT30640495Triticum turgidumNymphaea colorata30.834.0785.51138forward
CNT30295130Triticum turgidumTriticum aestivum25.2210.1391.15113reverse complement
CNT30224773Triticum turgidumHordeum vulgare22.7741.6397.06102forward
CNT30568742Triticum turgidumActinidia chinensis30.3662.9686.76136forward
CNT30552909Triticum turgidumOryza glaberrima22.7737.0988.24102forward
CNT30172487Triticum turgidumTrifolium pratense21.6530.1287.6397forward
CNT30143339Triticum turgidumLolium perenne29.4635.1193.18132forward
CNT301752Triticum turgidumZea mays30.3652.1191.18136forward
CNT30479018Triticum turgidumArabidopsis halleri27.2337.7781.97122forward
CNT30367474Triticum turgidumSorghum bicolor41.2965.1492.97185forward
CNT30369767Triticum turgidumOryza glumipatula30.5853.3189.78137forward
CNT30578215Triticum turgidumOryza barthii24.5515.3689.09110forward
CNT30115466Triticum turgidumOryza nivara22.5436.4695.05101forward
CNT30112113Triticum turgidumFicus carica12.525.9394.6456forward

Expression of CNT30395728

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MPIAGPSPFAAISRAQGMLKLSTVCVCVCFSFGVAEAAAGQGGGGGGGLGFEV

>peptide 2 (89 aa)
MKTVSRSESCDECKGKETGRSPKTVLMGFMATWFLAASPMRRSESVKATYDGVVRLPWSLAMISTRSCRGRCRSPARRPSPPSLALRGC*

Sequence

>CNT30395728
AACACTTAGATCCATGGAAACATTACCAAAACACGCTAACCGGAGTAAATCGAGGGTAGCCTAGTAATAATCAATTTATGAAAACAGTAAGCAGATCTGA
GAGCTGTGACGAGTGCAAAGGCAAAGAGACGGGGCGCTCACCGAAGACGGTGTTGATGGGGTTCATGGCCACCTGGTTCTTGGCGGCGTCGCCGATGAGG
CGCTCCGAGTCGGTGAAGGCGACGTACGACGGCGTGGTGCGGTTGCCCTGGTCATTGGCGATGATCTCGACCCGGTCGTGCCGAGGTCGATGCCGATCGC
CGGCCCGTCGCCCTTCGCCGCCATCTCTCGCGCTCAGGGGATGCTGAAGCTCTCTACCGTGTGTGTGTGTGTGTGTTTTTCTTTCGGGGTGGCAGAAGCG
GCGGCGGGTCAAGGAGGAGGGGGCGGAGGGGGGCTAGGGTTTGAAGTG