Detailed information on CNT3079894


BLAST search results

BLAST vs Swiss-Prot:
sp|O65719|HSP7C_ARATH, E-value = 2e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697157Brassica junceaOryza sativa23.329.2887.6965forward
CNT30521211Brassica junceaSetaria italica29.7530.2984.3483forward
CNT30640495Brassica junceaNymphaea colorata76.3452.5984.51213forward
CNT30535611Brassica junceaEucalyptus grandis77.788.6382.03217forward
CNT30404377Brassica junceaBeta vulgaris46.9533.4283.97131forward
CNT30491218Brassica junceaOlea europaea29.7512.0585.5483forward
CNT30224773Brassica junceaHordeum vulgare26.5230.285.1474forward
CNT30394412Brassica junceaTriticum turgidum43.7314.2783.61122forward
CNT30569551Brassica junceaActinidia chinensis73.4820.3481.95205forward
CNT30172487Brassica junceaTrifolium pratense70.2560.8785.71196forward
CNT30440625Brassica junceaAegilops tauschii43.7343.4283.61122forward
CNT30665093Brassica junceaTriticum dicoccoides67.0359.3782.89187forward
CNT30447372Brassica junceaSaccharum spontaneum66.3158.1881.62185forward
CNT30143339Brassica junceaLolium perenne61.2945.4882.46171forward
CNT301752Brassica junceaZea mays76.781.9981.78214forward
CNT30685689Brassica junceaTriticum urartu34.4137.2184.3896forward
CNT30479018Brassica junceaArabidopsis halleri77.0666.5691.16215forward
CNT30361391Brassica junceaSorghum bicolor59.8619.9582.63167forward
CNT30369767Brassica junceaOryza glumipatula45.5249.4282.68127forward
CNT3024414Brassica junceaPopulus trichocarpa69.8963.9384.1195forward
CNT30578215Brassica junceaOryza barthii23.39.0887.6965forward
CNT30115466Brassica junceaOryza nivara35.4835.7485.8699forward

Expression of CNT3079894

Peptides detected in this lncRNA

>peptide 1 (78 aa)
RTEDSVNRIHGDLVLSGITNQPLGVGESDVRRRRPVSLIISDDLNTIVLPYSDAGVGGTEIDTDSWTFSFTRHCEIDE*

>peptide 2 (29 aa)
VPKTVLIGFMATWFLAASPINLSESVKAT*

Sequence

>CNT3079894
CGTACCGAAGACAGTGTTAATCGGATTCATGGCGACCTGGTTCTTAGCGGCATCACCAATCAACCTCTCGGAGTCGGTGAAAGCGACGTAAGACGGCGTC
GTCCTGTTTCCCTGATCATTAGCGATGATCTCAACACGATCGTGTTGCCATACTCCGACGCAGGAGTAGGTGGTACCGAGATCGATACCGATAGCTGGAC
CTTCTCCTTTACCCGCCATTGTGAGATCGACGAATAAAGCTTTGAGGCGGCGGTGAAGGAAGTAGGTTTGAGTTTGAGT